Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    26   0.32 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.8  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 2   GTRKASLTPAEPGHYWVKINSMG 70
           G   A+  P EPG Y V + S+G
Sbjct: 271 GLNDATAAPGEPGPYTVNLGSLG 293


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 186 AYIARHARPTAASNLNLLNQNVK 118
           AY+++  R   A NLNL  + VK
Sbjct: 266 AYVSKQKRWELARNLNLTERQVK 288


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 35  PGHYWVKINSMG 70
           PG YW+++  +G
Sbjct: 403 PGAYWIQLRGLG 414


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 35  PGHYWVKINSMG 70
           PG YW+++  +G
Sbjct: 403 PGAYWIQLRGLG 414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,187
Number of Sequences: 336
Number of extensions: 2086
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)