Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   5.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   5.5  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.7  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 219 SSISVARIKNMAYIARHARPTAASNLNLLNQNVKYNS 109
           S++  A  KN+   ARH RP   S+ + L +  KY+S
Sbjct: 85  STVVTAPEKNVVS-ARHVRPNPKSSKDTLEKQPKYSS 120


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 177 ARHARPTAASNLNLLNQNVKYNSSSVDSSDIAEYS 73
           +R   P   +N NLL +N    +++ D SDI+  S
Sbjct: 146 SRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSS 180


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 223 CFLPC*CAYLQRAD-MKS*VSVLLIIHHKQVQSPLINCYILKCVE 354
           C++ C C      + + S +S +L I+H  +    +NC+ L  +E
Sbjct: 180 CWITCTCPERSTIERVSSIISKILSINHDSIWGIGVNCFHLSLLE 224


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 125 FWFNKFKLDAAVGRACLAMYAMFLILATLIELNVF 229
           F F +F L    GR CL  YA+ +++ + + L +F
Sbjct: 393 FLFWRFHLPLPSGRECLMEYALHMVINS-VTLYIF 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,500
Number of Sequences: 5004
Number of extensions: 34417
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)