Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)                37   0.013
SB_36362| Best HMM Match : Asp (HMM E-Value=0)                         28   7.7  

>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 25/70 (35%), Positives = 35/70 (50%)
 Frame = +2

Query: 8   RKASLTPAEPGHYWVKINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYA 187
           + A L P +P    V I S  + +++               FNK+KL+  VG A L MY 
Sbjct: 284 KSAFLQPGKP----VVIQSENIFFTSAMLIGSIAVTFLLIQFNKWKLNVKVGIAFLIMYF 339

Query: 188 MFLILATLIE 217
           +FLI+AT IE
Sbjct: 340 LFLIVATYIE 349


>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
          Length = 236

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 50  VKINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYAMFLILATLIELNVF 229
           V INS GL  S               W+ K+ L+  VG   L  Y +F+ ++ ++E+N F
Sbjct: 165 VVINSHGLFISCFFILGSIAVTLIIIWYYKWTLNKKVGCIYLVFYFIFMSISVVVEMNAF 224

Query: 230 FPVNVRTC 253
              N   C
Sbjct: 225 GNFNPPMC 232


>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 125 FWFNKFKLDAAVGRACLAMYAMFLILATLIELNV 226
           +W  +FK+D A+ R CL     ++ +A+++EL++
Sbjct: 242 YW--QFKMDGALLRDCLICIYFYIKIASILELSI 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,344
Number of Sequences: 59808
Number of extensions: 243206
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)