Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084156-1|AAL89894.1|  535|Drosophila melanogaster RE34149p pro...    88   9e-18
BT030288-1|ABN49427.1|  306|Drosophila melanogaster IP18558p pro...    44   2e-04
AE014297-68|AAF52139.2|  473|Drosophila melanogaster CG1090-PA, ...    42   0.001
AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB, ...    42   0.001

>AY084156-1|AAL89894.1|  535|Drosophila melanogaster RE34149p
           protein.
          Length = 535

 Score = 88.2 bits (209), Expect = 9e-18
 Identities = 44/81 (54%), Positives = 51/81 (62%)
 Frame = +2

Query: 11  KASLTPAEPGHYWVKINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYAM 190
           KA   P +PG  +V INS GLEYSAI            F  NKFKLD  VG ACL MY +
Sbjct: 452 KAVFFPIQPGQNYVAINSAGLEYSAITLLSTLFLLYLTFSTNKFKLDKKVGTACLVMYLV 511

Query: 191 FLILATLIELNVFFPVNVRTC 253
           F++ A+LIELNVFF VN+ TC
Sbjct: 512 FMVFASLIELNVFFRVNLPTC 532


>BT030288-1|ABN49427.1|  306|Drosophila melanogaster IP18558p
           protein.
          Length = 306

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +2

Query: 53  KINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYAMFLILATLIELNVFF 232
           ++ + G+EY+ +              F+ ++L   VG A   +Y +F++L  LIE+NVFF
Sbjct: 241 QVGTQGIEYNILILIISTMALFIILSFSGYRLTKRVGVALFTVYGVFIVLQILIEMNVFF 300

Query: 233 P 235
           P
Sbjct: 301 P 301


>AE014297-68|AAF52139.2|  473|Drosophila melanogaster CG1090-PA,
           isoform A protein.
          Length = 473

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 25/74 (33%), Positives = 35/74 (47%)
 Frame = +2

Query: 32  EPGHYWVKINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYAMFLILATL 211
           +PG + V + S GL YS +               N +KLD  +G   +  Y  F+ LA+L
Sbjct: 399 KPGSH-VNVISKGLAYSTLSLFSTVVFLILSTHLNGWKLDKRLGIILMVWYLFFITLASL 457

Query: 212 IELNVFFPVNVRTC 253
            ELNVF  +N   C
Sbjct: 458 YELNVFGYMNPPEC 471


>AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB,
           isoform B protein.
          Length = 642

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 25/74 (33%), Positives = 35/74 (47%)
 Frame = +2

Query: 32  EPGHYWVKINSMGLEYSAIXXXXXXXXXXXXFWFNKFKLDAAVGRACLAMYAMFLILATL 211
           +PG + V + S GL YS +               N +KLD  +G   +  Y  F+ LA+L
Sbjct: 568 KPGSH-VNVISKGLAYSTLSLFSTVVFLILSTHLNGWKLDKRLGIILMVWYLFFITLASL 626

Query: 212 IELNVFFPVNVRTC 253
            ELNVF  +N   C
Sbjct: 627 YELNVFGYMNPPEC 640


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,535,890
Number of Sequences: 53049
Number of extensions: 354556
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)