Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.64 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.64 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.64 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   2.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 432 VDRLCLIVFTLFTVLATIVIL 452


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 500 VDRLCLIVFTLFTVLATIVIL 520


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 VGRACLAMYAMFLILATLIEL 220
           V R CL ++ +F +LAT++ L
Sbjct: 500 VDRLCLIVFTLFTVLATIVIL 520


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 259 LFASTHINREENIKFD*CCEN*KHGVHS 176
           LFA+  I + E I FD  C++ K+  +S
Sbjct: 605 LFATKDIKQNEEITFDYMCQSSKNSENS 632


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -3

Query: 282 TNLRFHIRSLQVRTLTGKKTLSSISVARIKNMAYIARHARPTAASNLNLLNQNVKYNSSS 103
           T    H  SL + T T   +  S++VA+ +N   +      T++SN+N  + N   NSS+
Sbjct: 501 TKFLMHKDSLGLSTAT---STCSLAVAKQQNQVPL------TSSSNVNNNSGNGNTNSSA 551

Query: 102 VDSSDIAE 79
            DSS   E
Sbjct: 552 RDSSPAIE 559


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 460 TSLNYTNLL*F*IXQYVINYKETCLMITFKKHIQNIQRTS 341
           T L    +L F I    ++Y+ +CL+  FK+     +R S
Sbjct: 47  TKLKIIEILQF-ILDVRLDYRISCLLSIFKQEFDETERAS 85


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 460 TSLNYTNLL*F*IXQYVINYKETCLMITFKKHIQNIQRTS 341
           T L    +L F I    ++Y+ +CL+  FK+     +R S
Sbjct: 15  TKLKIIEILQF-ILDVRLDYRISCLLSIFKQEFDETERAS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,380
Number of Sequences: 438
Number of extensions: 2255
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)