Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0567
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18050.1 68417.m02686 ABC transporter family protein contains...    29   2.1  
At5g46540.1 68418.m05730 ABC transporter family protein contains...    28   4.8  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    27   8.4  

>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
            profile: PF00005 ABC transporter; similar to
            multidrug-resistant protein CjMDR1 GI:14715462 from
            [Coptis japonica]
          Length = 1281

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 225  TLSSISVARIKNMAYIARHARPTAASNLNLLNQNVKYNSSSVDSSDIAEYSNPIE 61
            T+ +I V++   MA  +  A+ +AAS  ++L+   K +SSS + + +   +  IE
Sbjct: 940  TIMAIGVSQTSAMAPDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVNGDIE 994


>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
            profile: PF00005 ABC transporter; similar to
            multidrug-resistant protein CjMDR1 GI:14715462 from
            [Coptis japonica]
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 225  TLSSISVARIKNMAYIARHARPTAASNLNLLNQNVKYNSSSVDSSDIAEYSNPIEL 58
            TL+++ V +   MA     A+ +AAS  ++L+   K +SSS   + +      IEL
Sbjct: 952  TLTAVGVTQTSTMAPDINKAKDSAASIFDILDSKPKIDSSSEKGTILPIVHGDIEL 1007


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 192 NMAYIARHARPTAASNLNLLNQNVKYNSSSVDSSDIAEYSNPIELILTQ*CPG 34
           +M Y   H   T   +L +L + +  +S  +   DI  Y+  IELI  Q C G
Sbjct: 599 SMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDLQGCTG 651


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,359,142
Number of Sequences: 28952
Number of extensions: 166064
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)