Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0565
(352 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 132 2e-30
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 124 6e-28
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 101 4e-21
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 95 2e-19
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 93 2e-18
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 89 1e-17
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 89 2e-17
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 78 4e-14
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 77 6e-14
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 76 1e-13
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 75 3e-13
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 71 5e-12
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 68 4e-11
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 67 9e-11
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 59 2e-08
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 56 1e-07
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 56 2e-07
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 54 7e-07
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 50 1e-05
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 48 6e-05
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 48 6e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 45 3e-04
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 45 4e-04
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 41 0.007
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 40 0.009
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 40 0.009
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 38 0.036
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 36 0.14
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 36 0.14
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 36 0.25
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 36 0.25
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 33 1.8
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 31 4.1
UniRef50_Q74FC3 Cluster: 1-deoxy-D-xylulose-5-phosphate synthase... 31 5.4
UniRef50_A3BEP0 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_Q84ZG1 Cluster: Putative uncharacterized protein P0656C... 30 9.5
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 132 bits (318), Expect = 2e-30
Identities = 55/82 (67%), Positives = 71/82 (86%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFL 191
MTG +N+ +VIDGRGHLLGRLA+V+ K LL+G KV VVRCE+ N+SG+F+RNK+K +++L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 192 RKRCXVNPAXGPFHFXAPSKIY 257
RKRC VNPA GPFHF APS+I+
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIF 82
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
+K VRGMIPHKT RG+ A RL +DG P+
Sbjct: 83 YKAVRGMIPHKTKRGQAALARLRVFDGIPSPY 114
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 124 bits (298), Expect = 6e-28
Identities = 55/81 (67%), Positives = 66/81 (81%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFL 191
M G S K I+IDGRGHLLGRLA+VI K +L G KVVVVRCE +SG+FFRNK+K +++L
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYL 60
Query: 192 RKRCXVNPAXGPFHFXAPSKI 254
RKRC VNPA GPFHF APS++
Sbjct: 61 RKRCNVNPARGPFHFRAPSRM 81
Score = 52.8 bits (121), Expect = 2e-06
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +2
Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
LWK VRGM+PHKT RG NA +RL Y+G PF
Sbjct: 82 LWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPF 114
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 101 bits (241), Expect = 4e-21
Identities = 46/78 (58%), Positives = 57/78 (73%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
K +V+D RGHLLGRLAA + K LL G +VV VR E+ NISG+ FRNKLK +FL+KR
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP GPFHF +P++I R
Sbjct: 64 NPRRGPFHFRSPARILWR 81
Score = 51.6 bits (118), Expect = 4e-06
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +2
Query: 227 FPFXSSI*DLWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
F F S LW+T+RGMIPHKT RG A RL ++G PP+
Sbjct: 70 FHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPY 111
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 95.5 bits (227), Expect = 2e-19
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
+G S + IV+D R H+LGRL++++ K LL G +VVVVRCE+ +SG R K+K + FLR
Sbjct: 5 SGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLR 64
Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
KR P+ GP HF APSKI R
Sbjct: 65 KRMNTKPSHGPIHFRAPSKILWR 87
Score = 51.2 bits (117), Expect = 5e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +2
Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
LW+T+RGMIPHKT RG A RL Y+G PP+
Sbjct: 85 LWRTIRGMIPHKTKRGAAALARLKVYEGVPPPY 117
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 92.7 bits (220), Expect = 2e-18
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
IVID + H+LGR AAV+ K LL G K+ VVRCEQ NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 216 AXGPFHFXAPSKIYGR 263
GPFH APS ++ R
Sbjct: 85 TKGPFHHRAPSDVFVR 100
Score = 31.1 bits (67), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSP 346
+TVR M+P T RG A L Y+G P
Sbjct: 100 RTVRSMLPRYTKRGMKALNSLVAYEGIPP 128
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 89.4 bits (212), Expect = 1e-17
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +3
Query: 27 NKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCX 206
+K +VID +GHLLGRLA+ + K LL G ++VVVR E NISG+ FRN++K FL K
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 207 VNPAXGPFHFXAPSKIYGR 263
NP G HF APS+I+ R
Sbjct: 135 HNPRRGVQHFRAPSRIFWR 153
Score = 41.1 bits (92), Expect = 0.005
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+ VRGM+PHKT +G A RL ++G P+
Sbjct: 152 WRAVRGMLPHKTPKGAAALERLKIFEGIPTPY 183
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 89.0 bits (211), Expect = 2e-17
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+ GRGHLLG LAA + K +L G KVVVV E NISGNF+RNKLK ++FL K+
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 210 NPAXGPFHFXAPSKIY 257
NP+ GP+ F APS+I+
Sbjct: 64 NPSRGPYRFQAPSRIF 79
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 78.2 bits (184), Expect = 4e-14
Identities = 33/75 (44%), Positives = 50/75 (66%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
K V+D + HLLGR+A++ K +L+G+K++++R E +I+G RN K S +K+
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 210 NPAXGPFHFXAPSKI 254
NP GPFHF +PSKI
Sbjct: 62 NPRRGPFHFKSPSKI 76
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 227 FPFXSSI*DLWKTVRGMIPHKTXRGKNAXRRLXTYDG 337
F F S L++T++ MIPHKT RG A + L ++G
Sbjct: 68 FHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEG 104
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 77.4 bits (182), Expect = 6e-14
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +3
Query: 27 NKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCX 206
+K IVID +GHL GRLA+++ K LL+G VVVVR E +SG R ++ + KR
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 207 VNPAXGPFHFXAPSKIY 257
NP GP+H+ +PS+++
Sbjct: 62 TNPKKGPYHYTSPSRLF 78
Score = 46.0 bits (104), Expect = 2e-04
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
WKTVRGM+PHKT RG A R Y+G P+
Sbjct: 79 WKTVRGMLPHKTVRGAAAFERFKAYEGIPAPY 110
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 76.2 bits (179), Expect = 1e-13
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
IVID +GH+LGRL+A++ K LL G++V +VRCE+ ISG F K + + KR N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 216 AXGPFHFXAPSKIYGR 263
GPFHF AP++I R
Sbjct: 64 LRGPFHFRAPAEIVRR 79
Score = 41.9 bits (94), Expect = 0.003
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSP 346
+T+RGMIP+KT RG +A RL YDG P
Sbjct: 79 RTIRGMIPYKTVRGSDAMSRLRVYDGIPP 107
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 75.4 bits (177), Expect = 3e-13
Identities = 37/76 (48%), Positives = 46/76 (60%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
IVID +GH+ GRLAA + K LL+G KVVVVRCE+ ++G FL K NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 216 AXGPFHFXAPSKIYGR 263
GPFH AP +I+ R
Sbjct: 65 RDGPFHQRAPHEIFAR 80
Score = 33.9 bits (74), Expect = 0.77
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDG 337
+ VRGMIP+KT RG +A L Y+G
Sbjct: 80 RAVRGMIPYKTHRGADAFANLQCYEG 105
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 70.9 bits (166), Expect = 5e-12
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 9 EMTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSF 188
E +NK VID GH+LGR+A+V+ K LL G K+V+VRCE + G ++ +
Sbjct: 3 EQMSTNNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELY 62
Query: 189 LRKRCXVNPAXGPFHFXAPSKI 254
RKR NP G FH +P+++
Sbjct: 63 QRKRVNTNPTRGAFHHRSPAEM 84
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 68.1 bits (159), Expect = 4e-11
Identities = 32/70 (45%), Positives = 42/70 (60%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
++ID G + G+LAA + K+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 216 AXGPFHFXAP 245
GPFHF P
Sbjct: 67 RRGPFHFREP 76
Score = 31.5 bits (68), Expect = 4.1
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDG 337
L K +R MI +K RGK A RL TY+G
Sbjct: 80 LAKIIRRMISYKKPRGKAAMSRLATYEG 107
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 66.9 bits (156), Expect = 9e-11
Identities = 36/91 (39%), Positives = 51/91 (56%)
Frame = +3
Query: 60 LLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNPAXGPFHFX 239
+LGRLA+++ K L + +VRCE+ ISG R K+K M FLR+R P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 240 APSKIYGRL*EA*SHTKXXVARMLLGGYXHM 332
+ +G L HT+ VAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 58.8 bits (136), Expect = 2e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 39 VIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNPA 218
++D H+ GRLA+ + K+LLEGN+V ++ CE+ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 219 XGPFHFXAPSKIYGRL 266
GP+H P I R+
Sbjct: 61 HGPYHPRRPDTIMTRM 76
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 56.4 bits (130), Expect = 1e-07
Identities = 25/81 (30%), Positives = 44/81 (54%)
Frame = +3
Query: 24 SNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRC 203
+++ IV+D H+ GRL++ + K+L +G++V +V CE+ SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 204 XVNPAXGPFHFXAPSKIYGRL 266
+NP GP H+ P I ++
Sbjct: 70 IINPKHGPVHYRRPDTIITKM 90
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 56.0 bits (129), Expect = 2e-07
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLK-LMSF 188
M+G +AIVIDG GH+ GRLA+V+ K LL+G++VVVV E+ I+G R K L +
Sbjct: 1 MSG-KEEAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRW 59
Query: 189 LRKRCXVNP-AXGPFHFXAPSKIYGRL 266
+ + NP GP + P +++ R+
Sbjct: 60 VEWKTYYNPELRGPKYPKTPDRLFKRM 86
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 54.0 bits (124), Expect = 7e-07
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
K IVIDGR L+GRLA+ I +L +G + V+RC+ SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 210 NPAXGPFHFXAPSKIYGRL 266
NP GP+ F PS + ++
Sbjct: 63 NPNKGPYFFSNPSSLLKKI 81
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 49.6 bits (113), Expect = 1e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +2
Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
LW+TVRGMIPHKT RG+ A RL Y+ +PP+
Sbjct: 59 LWRTVRGMIPHKTKRGEAALARLKAYEVVTPPY 91
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVV 119
+G +V+D R H+L RLA++I K LL G +VV
Sbjct: 5 SGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVV 39
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 47.6 bits (108), Expect = 6e-05
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +3
Query: 39 VIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGN--FFRNKLKLMSFLRKRCXVN 212
+I+ G +LGRLA+ + K+LLEG +VV+V E+ I+GN +K K + L R N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGL--RTLTN 60
Query: 213 PAXGPFH 233
P GPF+
Sbjct: 61 PRRGPFY 67
Score = 37.5 bits (83), Expect = 0.063
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
+T+RGM+P KT RG+ A RRL Y G F
Sbjct: 77 RTIRGMLPWKTDRGRKAFRRLKVYVGIPKEF 107
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 47.6 bits (108), Expect = 6e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Frame = +3
Query: 39 VIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNPA 218
VID +LGRLA+V+ K +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 219 XGPFHFXAPSKIYGRL 266
GPF+ P I+ R+
Sbjct: 74 KGPFYPRRPDLIFRRV 89
Score = 33.9 bits (74), Expect = 0.77
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDG 337
+ VRGM+P KT RG+ A +RL Y G
Sbjct: 88 RVVRGMLPWKTKRGREAFKRLRAYIG 113
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 45.2 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +3
Query: 39 VIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNPA 218
VID GH+LGRL++ I K LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 219 XGPFHFXAPSKIYGR 263
GP+ P +I+ R
Sbjct: 75 KGPYFPRHPERIFKR 89
Score = 34.3 bits (75), Expect = 0.58
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDG 337
+TVRGM+P K+ RG++A RRL + G
Sbjct: 89 RTVRGMLPWKSSRGRDAYRRLRVFMG 114
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 44.8 bits (101), Expect = 4e-04
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGN 155
+ G + IV+DG G ++GRLA+V+ K+LL G +V VV E+ +SG+
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 40.7 bits (91), Expect = 0.007
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISG 152
T + ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG
Sbjct: 3 TQVQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISG 48
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 40.3 bits (90), Expect = 0.009
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
+V+D R +LGR+++ + + +L+G V VV E+ I+G N+ M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 216 AXGPFHFXAPSKIYGR 263
GP++ P +I+ R
Sbjct: 66 DSGPYYPKRPDRIFKR 81
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 40.3 bits (90), Expect = 0.009
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLE--GNKVVVVRCEQXNISGNFFRNKLKLMSFLRK---- 197
+++D GH+ GRLA I K LLE ++VVV E+ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 198 RCXVNP-AXGPFHFXAPSKIYGRL 266
R NP GP P +++ R+
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRI 99
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 38.3 bits (85), Expect = 0.036
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 39 VIDGRGHLLGRLAAVIXKVLLEGN-KVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
VID +G +LGRLA+ + K LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 216 AXGPFHFXAPSKIYGR 263
GP+ P +I R
Sbjct: 60 EFGPYFPKRPDRILKR 75
Score = 34.3 bits (75), Expect = 0.58
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDG 337
L +T+RGM+P+K RG++A RL Y G
Sbjct: 73 LKRTIRGMLPYKRARGRDAMSRLKVYVG 100
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISG 152
+++D +LGR++ I K+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 36.3 bits (80), Expect = 0.14
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
+V++ ++GRLA+ + K+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 216 -AXGPFHFXAPSKIYGRL 266
GP + P I R+
Sbjct: 62 KKMGPKYPRRPDDIVRRV 79
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 35.5 bits (78), Expect = 0.25
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 167 VPKEVARDVXLFAANHNN-----FVPFEKDLXDDCRQTAQQMTTAIDHYGLI 27
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 35.5 bits (78), Expect = 0.25
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXVNP 215
+++D R ++GR+A+ + + L+G V VV E+ I+G + +++ KR +
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDIGN 65
Query: 216 AXGPFHFXAPSKIYGR 263
G F+ P I+ R
Sbjct: 66 DNGYFYPKRPDGIFKR 81
Score = 32.3 bits (70), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDG 337
+T+RGM+PHK RG+ A + Y G
Sbjct: 81 RTIRGMLPHKKQRGREAFESVRVYLG 106
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 32.7 bits (71), Expect = 1.8
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +3
Query: 36 IVIDGRGHLLGRLAAVIXKVLLEGNK--VVVVRCEQXNISGNFFRNK 170
++I+ + +LGRLA+ + K LL + + +V+ Q ++GN ++NK
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK 47
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 31.5 bits (68), Expect = 4.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 235 KWKGPXAGFTXHLLRRNDISXSLFLKKLPEMXICSQRTTTTLFPSRR 95
+W+ +G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 24 EWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q74FC3 Cluster: 1-deoxy-D-xylulose-5-phosphate synthase 1;
n=40; Bacteria|Rep: 1-deoxy-D-xylulose-5-phosphate
synthase 1 - Geobacter sulfurreducens
Length = 637
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 3 AREMTGFSNKAIVIDGRGHLLGRLA--AVIXKVLLEGNKVVVVRCEQXNISGN 155
ARE+ G SNK + + G G + G +A A+ L+ N +VV+ + +IS N
Sbjct: 130 ARELRGGSNKVVAVIGDGSMTGGIAFEALNQAGHLKKNLIVVLNDNEMSISPN 182
>UniRef50_A3BEP0 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 273
Score = 30.7 bits (66), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 43 SMAVVICWAVWRQSSXRSFSKGTK 114
S+ ++ICW VWR+ + R F + T+
Sbjct: 224 SLCLLICWFVWRERNFRIFEQKTR 247
>UniRef50_Q84ZG1 Cluster: Putative uncharacterized protein
P0656C04.121; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0656C04.121 - Oryza sativa subsp. japonica (Rice)
Length = 184
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 111 CSLREGPXR*LPPDGPADDHGHRSL 37
C LR P LPP P+ HGHR L
Sbjct: 69 CRLRARPRPPLPPSPPSPRHGHRCL 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,986,729
Number of Sequences: 1657284
Number of extensions: 5000613
Number of successful extensions: 9010
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 8860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9005
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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