Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0565
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   113   8e-27
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   113   8e-27
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   110   5e-26
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    30   0.12 
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.1  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    24   6.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   6.0  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  113 bits (272), Expect = 8e-27
 Identities = 50/76 (65%), Positives = 62/76 (81%)
 Frame = +3

Query: 30  KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
           K +VID +GHLLGRLA+V+ K LL G KVVVVRCE+ NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 210 NPAXGPFHFXAPSKIY 257
           NP+ G FHF APS+I+
Sbjct: 66  NPSRGAFHFRAPSRIF 81



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           K VRGM+PHKT RG+ A   L   +G  PPF
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPF 113


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  113 bits (272), Expect = 8e-27
 Identities = 50/76 (65%), Positives = 62/76 (81%)
 Frame = +3

Query: 30  KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
           K +VID +GHLLGRLA+V+ K LL G KVVVVRCE+ NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 210 NPAXGPFHFXAPSKIY 257
           NP+ G FHF APS+I+
Sbjct: 66  NPSRGAFHFRAPSRIF 81



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           K VRGM+PHKT RG+ A   L   +G  PPF
Sbjct: 83  KAVRGMLPHKTARGQAALEHLQAVEGIPPPF 113


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  110 bits (265), Expect = 5e-26
 Identities = 47/76 (61%), Positives = 61/76 (80%)
 Frame = +3

Query: 30  KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
           K ++ID +GHL+GRLA+ + K LL G KVVVVRCE+ NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 210 NPAXGPFHFXAPSKIY 257
           NP+ G FHF APS+I+
Sbjct: 66  NPSRGAFHFRAPSRIF 81



 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 260 KTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           K VRGM+PHKT RG  A + L   +G  PPF
Sbjct: 83  KAVRGMLPHKTTRGNIALKNLQALEGIPPPF 113


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 153 CQRCXFVRSEPQQLCS-LREGPXR*LPPDG 67
           C+ C F RS    LCS +RE   R L PDG
Sbjct: 99  CKECKFCRSGKTNLCSKIRETQGRGLMPDG 128


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 57  HLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFF 161
           H L  + AV  K++  G K VV+RC+    + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 128 ANHNNFVPFEKDLXDDCRQTAQQMTTAIDHYGLIAKARH 12
           A+  NFVP+E       R T+Q + + +  Y L A   H
Sbjct: 289 ASQQNFVPYELAELYKQRGTSQDLKSILPLYMLAASLGH 327


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 321 SLLXAFLPRXVLCGIMPLTVFHK 253
           S L AFLP+  LC ++PL VF K
Sbjct: 693 SSLFAFLPQLSLCMLIPL-VFGK 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,706
Number of Sequences: 5004
Number of extensions: 20034
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)