Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0565
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0071 - 522920-523063,524125-524212,524289-524677                 96   8e-21
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906...    91   3e-19
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769...    50   7e-07
04_03_0148 + 11869929-11869968,11870000-11870421                       27   3.1  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    27   3.1  
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010           26   9.6  

>07_01_0071 - 522920-523063,524125-524212,524289-524677
          Length = 206

 Score = 95.9 bits (228), Expect = 8e-21
 Identities = 42/83 (50%), Positives = 57/83 (68%)
 Frame = +3

Query: 15  TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
           +G   + +V+D R H+LGRLA+++ K LL G +VVVVRCE+  ISG   R K+K + FLR
Sbjct: 5   SGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLR 64

Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
           KR    P+ GP HF APS+I+ R
Sbjct: 65  KRMNTKPSHGPIHFRAPSRIFWR 87



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           W+TVRGMIPHKT RG+ A   L  +DG  PP+
Sbjct: 86  WRTVRGMIPHKTPRGEAALANLKAFDGVPPPY 117


>03_06_0010 +
           30990002-30990273,30990372-30990488,30990581-30990668,
           30991505-30991648
          Length = 206

 Score = 90.6 bits (215), Expect = 3e-19
 Identities = 41/83 (49%), Positives = 55/83 (66%)
 Frame = +3

Query: 15  TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
           +G     +V+D R H+LGRLA++I K LL G +VVVVRCE+  +SG   R K+K + FLR
Sbjct: 5   SGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 64

Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
           KR    P+ GP HF +P+KI  R
Sbjct: 65  KRMNTKPSHGPIHFRSPAKILWR 87



 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +2

Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           LW+TVRGMIPHKT RG+ A  RL  Y+G  PP+
Sbjct: 85  LWRTVRGMIPHKTKRGEAALARLKAYEGVPPPY 117


>03_06_0007 -
           30975910-30975921,30976660-30976747,30976850-30976966,
           30977081-30977154
          Length = 96

 Score = 49.6 bits (113), Expect = 7e-07
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 254 LWKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
           LW+TVRGMIPHKT RG+ A  RL  Y+  +PP+
Sbjct: 19  LWRTVRGMIPHKTKRGEAALARLKAYEVVTPPY 51


>04_03_0148 + 11869929-11869968,11870000-11870421
          Length = 153

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 43  SMAVVICWAVWRQSSXRSF 99
           S+ ++ICW VW++ + R F
Sbjct: 99  SLVLLICWMVWKERNARVF 117


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 99   LEGNKVVVVRCEQXNISGNFFRNKLKLMS 185
            ++ + VVVV CE+  I+G    N +KL+S
Sbjct: 2523 IQNSSVVVVTCEREVITGGHADNSVKLIS 2551


>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
          Length = 613

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 51  RGHLLGRLAAVIXKVLLEGNKVVVVRCEQ 137
           +GHLL R    +  + LEG KV +  CEQ
Sbjct: 86  KGHLLDRHGLYMCDLCLEGRKVFI--CEQ 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,049,986
Number of Sequences: 37544
Number of extensions: 151797
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)