Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0565
(352 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.009
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 28 2.4
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64) 27 3.2
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 27 4.3
SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 27 5.7
SB_33215| Best HMM Match : HECT (HMM E-Value=0) 26 7.5
SB_5597| Best HMM Match : Peptidase_C25_C (HMM E-Value=4.7) 26 9.9
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 35.9 bits (79), Expect = 0.009
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 275 MIPHKTXRGKNAXRRLXTYDGCSPPF 352
MIPHKT +G A R+ +DG PP+
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPY 26
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 43 SMAVVICWAVWRQSSXRSFSKGTKLLWFAANKXTSLATSLG 165
SM+V +C ++W + F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
Length = 1294
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 152 ARDVXLF---AANHNNFVPFEKDLXDDCRQTAQQMTTAIDHYGLIAK 21
ARD+ F A + +F+ + + D T QQM+ AI YG AK
Sbjct: 144 ARDIYEFTRMAIDVQDFIQRFRAIIDSDSSTTQQMSIAIRGYGFFAK 190
>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 138 FVRSEPQQLCSLREGPXR*LPPDGPADDHGHR 43
+V +L S ++ P R PP GP DD G +
Sbjct: 569 YVEKYGPELESAKQTPKRKPPPTGPQDDKGQK 600
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGN 110
+G +NK ++IDG L A +V+++GN
Sbjct: 609 SGTTNKRVIIDGNDMLSPHSVATNKRVIIDGN 640
>SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 302 CHXXFCVGSCLLQSSINLRWSXKMERSTS 216
CH + GS +Q N++W+ +E + S
Sbjct: 141 CHSMYIFGSMGMQKKANIKWNKFLEETRS 169
>SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 290 FCVGSCLLQSSINLRWS 240
FCVG LL S +N+ WS
Sbjct: 305 FCVGVALLLSRLNVNWS 321
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 150 GNFFRNKLKLMSFLRKRCXVNPAXGP 227
GN F L+L S R+ C NP+ P
Sbjct: 318 GNVFSRPLRLFSRARRMCSWNPSDNP 343
>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
Length = 1128
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 160 KKLPEMXICSQRTTTTLFPSRRTL 89
K LP C QR + L+PS+R L
Sbjct: 1089 KALPMATTCGQRMSIPLYPSKRIL 1112
>SB_5597| Best HMM Match : Peptidase_C25_C (HMM E-Value=4.7)
Length = 155
Score = 25.8 bits (54), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 61 CWAVWRQSSXRSF 99
CW VWR S+ R+F
Sbjct: 130 CWRVWRTSNRRTF 142
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 281 GSCLLQSSINLRWSXKMERSTSRIHXAPL 195
G L++ + L W+ ++ RST ++ +PL
Sbjct: 1712 GGSLMEQNPALEWNTQLWRSTQEVYISPL 1740
>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 281 GSCLLQSSINLRWSXKMERSTSRIHXAPL 195
G L++ + L W+ ++ RST ++ +PL
Sbjct: 384 GGSLMEQNPALEWNTQLWRSTQEVYISPL 412
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,809
Number of Sequences: 59808
Number of extensions: 165428
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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