Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0565
(352 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protei... 116 3e-26
BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein. 116 3e-26
BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a ... 116 3e-26
AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA seq... 108 6e-24
BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein. 50 3e-06
AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a ... 50 3e-06
>X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protein
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein.
Length = 201
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 3 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 62
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 63 NPSRGPYHFRAPSRIFWR 80
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 79 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 110
>BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a
variant protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A L +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDHLKVFDGIPPPY 112
>AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 116 bits (278), Expect = 3e-26
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVVRCE NISGNF+RNKLK ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 65 NPSRGPYHFRAPSRIFWR 82
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
>AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA
sequence from clone RP11-365K22 on chromosome 13
Contains a novel gene similar to ribosomal protein L13a
(RPL13A). ).
Length = 203
Score = 108 bits (259), Expect = 6e-24
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = +3
Query: 30 KAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRCXV 209
+ +V+DGRGHLLGRLAA++ K +L G KVVVV CE NISGNF+RNKL ++FLRKR
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVCCEGINISGNFYRNKLNYLAFLRKRMNT 64
Query: 210 NPAXGPFHFXAPSKIYGR 263
+P+ GP+HF APS+++ R
Sbjct: 65 SPSRGPYHFRAPSRVFWR 82
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL DG PP+
Sbjct: 81 WRTVRGMLPHKTKRGQAALDRLKVSDGIPPPY 112
>BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein.
Length = 142
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 20 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 51
Score = 31.9 bits (69), Expect = 0.59
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 4 NPSRGPYHFRAPSRIFWR 21
>AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a
protein.
Length = 142
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGM+PHKT RG+ A RL +DG PP+
Sbjct: 20 WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 51
Score = 31.9 bits (69), Expect = 0.59
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 210 NPAXGPFHFXAPSKIYGR 263
NP+ GP+HF APS+I+ R
Sbjct: 4 NPSRGPYHFRAPSRIFWR 21
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,220,931
Number of Sequences: 237096
Number of extensions: 847798
Number of successful extensions: 1017
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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