Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0565
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   119   7e-28
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   119   7e-28
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    27   5.0  
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    26   6.6  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  119 bits (286), Expect = 7e-28
 Identities = 53/82 (64%), Positives = 67/82 (81%)
 Frame = +3

Query: 18  GFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRK 197
           G SN+AI+IDG+ HLLGRLA+++ K LL+G+KVVV+R E+  ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 198 RCXVNPAXGPFHFXAPSKIYGR 263
           RC +NPA G FH+ AP KI+ R
Sbjct: 62  RCNINPARGAFHYRAPGKIFWR 83



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDG 337
           W+TVRGM+PHKT RG  A + L  Y+G
Sbjct: 82  WRTVRGMLPHKTNRGNEALKNLRAYEG 108


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  119 bits (286), Expect = 7e-28
 Identities = 53/82 (64%), Positives = 67/82 (81%)
 Frame = +3

Query: 18  GFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRK 197
           G SN+AI+IDG+ HLLGRLA+++ K LL+G+KVVV+R E+  ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 198 RCXVNPAXGPFHFXAPSKIYGR 263
           RC +NPA G FH+ AP KI+ R
Sbjct: 62  RCNINPARGAFHYRAPGKIFWR 83



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDG 337
           W+TVRGM+PHKT RG  A + L  Y+G
Sbjct: 82  WRTVRGMLPHKTNRGNEALKNLRAYEG 108


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVI 86
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical
          protein R08H2.1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVI 86
          M  FS K+I+I G    +GR AAVI
Sbjct: 1  MARFSGKSIIITGSSSGIGRSAAVI 25


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 135 QXNISGNFFRNKLKLM-SFLRKRCXVNPAXGPFHF 236
           Q + S NFF+NK K++ +FL+K+         FHF
Sbjct: 93  QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
          protein R05D8.7 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVI 86
          M  FSNK ++I G  + +GR  A++
Sbjct: 1  MPRFSNKTVIITGSSNGIGRTTAIL 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,349,344
Number of Sequences: 27780
Number of extensions: 122308
Number of successful extensions: 217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)