Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0565
(352 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 99 7e-22
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 97 2e-21
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 97 2e-21
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 97 4e-21
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 28 2.0
At2g28250.1 68415.m03429 protein kinase family protein contains ... 26 6.1
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 26 8.1
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 26 8.1
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 99.1 bits (236), Expect = 7e-22
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
+G +K +V+D R H+LGRLA++ K LL G KVV+VRCE+ +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
KR P+ GP HF APSKI+ R
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 46.8 bits (106), Expect = 4e-06
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGMIPHKT RG A RL Y+G P+
Sbjct: 86 WRTVRGMIPHKTKRGAAALARLKVYEGVPTPY 117
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 97.5 bits (232), Expect = 2e-21
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
+G +K +V+D R H+ GRLA++I K LL G VVVVRCE+ +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
KR P+ GP HF APSKI+ R
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGMIPHKT RG A RL ++G PP+
Sbjct: 86 WRTVRGMIPHKTKRGAAALARLKVFEGVPPPY 117
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 97.5 bits (232), Expect = 2e-21
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
+G K +V+D R H+LGRLA+V+ K LL G +VVVRCE+ +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
KR P+ GP HF APSKI+ R
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGMIPHKT RG NA RL ++G P+
Sbjct: 86 WRTVRGMIPHKTKRGANALARLKVFEGVPTPY 117
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 96.7 bits (230), Expect = 4e-21
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +3
Query: 15 TGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKLKLMSFLR 194
+G K +V+DGR H+LGRLA+ K LL G +VVVVRCE+ +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 195 KRCXVNPAXGPFHFXAPSKIYGR 263
KR P+ GP HF APSKI+ R
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 257 WKTVRGMIPHKTXRGKNAXRRLXTYDGCSPPF 352
W+TVRGMIPHKT RG A RL ++G PP+
Sbjct: 86 WRTVRGMIPHKTKRGAAALARLKVFEGIPPPY 117
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKL 173
M G++N IDG H+ G A++ + K+ V++ + ++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At2g28250.1 68415.m03429 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 565
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 99 LEGNKVVVVRCEQXNISGNFFRNKLKLMSFLRKRC 203
L+ +K V+ ++G F ++++M++L K C
Sbjct: 440 LQDSKRVIEELPDPRLNGKFAEEEMQIMAYLAKEC 474
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKL 173
M G++N IDG H+ G A++ + K V+ + ++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 12 MTGFSNKAIVIDGRGHLLGRLAAVIXKVLLEGNKVVVVRCEQXNISGNFFRNKL 173
M G++N IDG H+ G A++ + K V+ + ++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,071,479
Number of Sequences: 28952
Number of extensions: 116440
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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