Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0562
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BNQ9 Cluster: Similar to CA0135|CaVPS182 Candida albi...    33   7.4  
UniRef50_Q7P0B7 Cluster: Putative uncharacterized protein; n=1; ...    32   9.8  

>UniRef50_Q6BNQ9 Cluster: Similar to CA0135|CaVPS182 Candida
           albicans CaVPS182 vacuolar membrane protein; n=1;
           Debaryomyces hansenii|Rep: Similar to CA0135|CaVPS182
           Candida albicans CaVPS182 vacuolar membrane protein -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 1013

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 280 STKYYYLFKLYG---LVTRLLSKVLYFFLYPVTI*TKRYEGDFLVGTR 146
           +  YYYL + Y    L+ RL    + F ++P ++  K   GDFL+GT+
Sbjct: 109 NNNYYYLHESYNDFKLLPRLKGMDIKFVVFPNSLEYKESTGDFLMGTK 156


>UniRef50_Q7P0B7 Cluster: Putative uncharacterized protein; n=1;
           Chromobacterium violaceum|Rep: Putative uncharacterized
           protein - Chromobacterium violaceum
          Length = 423

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 61  ILNSYRYYTFKPEETLNRKNKTNHTTSLLAFPPKSPLHIFLFIL 192
           ILNS  ++T +PE TL+ +N  N T   L    +   ++++FI+
Sbjct: 326 ILNSAAFFTTRPEITLHLRNNDNTTLPYLVGEFRLTCYLYIFIV 369


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,612,705
Number of Sequences: 1657284
Number of extensions: 9607877
Number of successful extensions: 19023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19020
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)