Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0562
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.8  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   3.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   3.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   6.4  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   8.4  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 505 FX*SISQNRYIRAAHIGSVMKSI 437
           F  + + N +IR  H GS+ +SI
Sbjct: 137 FHIATTSNEFIRVHHSGSITRSI 159


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 351 TTMSKCRDSRETGARADIRNL 289
           T+ +KC D ++ GA+  I++L
Sbjct: 72  TSCAKCTDKQKQGAKTVIQHL 92


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 9   GYVQXLYLIFPHLCIFTDIKQL 74
           GY    ++IF   CI+T++ ++
Sbjct: 172 GYTLAKFMIFTSTCIYTNLLRI 193


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 88  MCNNGNCLISVKMHKC 41
           +CNNG C      H+C
Sbjct: 155 LCNNGTCEDIGNSHRC 170


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 351 TTMSKCRDSRETGARADIRNL 289
           T+ SKC   ++ G+R  IR L
Sbjct: 71  TSCSKCSQRQQDGSRTIIRYL 91


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 351 TTMSKCRDSRETGARADIRNL 289
           T+ SKC   ++ G+R  IR L
Sbjct: 71  TSCSKCSQRQKDGSRTIIRYL 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,367
Number of Sequences: 336
Number of extensions: 2683
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)