Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0562
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   2.9  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    25   6.8  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 257 KKIVIFS*YIFKFR--ISARAPVSLESRHLLIVVHSRCLVHCNVIHRILRY 403
           K I  FS YI  FR  +     VS E+RH L  +     +  NV   +L+Y
Sbjct: 101 KHIPAFSAYIVAFRSVLQPEVQVSPEARHKLAEIDKGSHLEANVSGGLLKY 151


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 493 ISQNRYIRAAHIGSVMKSIC*YLIT*VYDYIPKYPMNNVAMD*APRMDDDEQVSRLEGDR 314
           +S N   +   +GSV + +    I+    YIP +  +  +   AP + DDE VS     R
Sbjct: 1   MSDNVQQQVDSVGSVTEKLQKTNISRPRKYIPPFARDKPSAGAAPAVGDDESVS----SR 56

Query: 313 GACRYSKFKNISTKY 269
           G+ R       S+ Y
Sbjct: 57  GSSRSQTPSEFSSNY 71


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 352 DDDEQVSRLEGDRGA 308
           DD+EQ+S+LE + GA
Sbjct: 191 DDEEQISKLESNEGA 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,222
Number of Sequences: 5004
Number of extensions: 43788
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)