Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0562
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20856| Best HMM Match : Transposase_11 (HMM E-Value=2.3) 30 1.8
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7) 30 1.8
SB_9380| Best HMM Match : DUF156 (HMM E-Value=1.5) 29 3.1
SB_59744| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_53945| Best HMM Match : POPLD (HMM E-Value=1) 28 5.4
SB_40511| Best HMM Match : POPLD (HMM E-Value=6.4) 28 5.4
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1) 28 5.4
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2) 28 5.4
SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7) 28 5.4
SB_51673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_49474| Best HMM Match : DUF156 (HMM E-Value=5.2) 28 7.1
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1) 28 7.1
SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3) 28 7.1
SB_10503| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46) 28 7.1
SB_371| Best HMM Match : DUF156 (HMM E-Value=4.6) 28 7.1
SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 28 7.1
SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 27 9.4
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71) 27 9.4
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_20856| Best HMM Match : Transposase_11 (HMM E-Value=2.3)
Length = 449
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSDT 396
+PG PR TLA + +AVP +P++ +SDT
Sbjct: 116 KPGFPRSLTLAQKLLYAVPATPVESTASDT 145
>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
Length = 1223
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSDT 396
+PG PR TLA + +AVP +P++ +SDT
Sbjct: 42 KPGFPRSLTLAQKLLYAVPATPVESTASDT 71
>SB_9380| Best HMM Match : DUF156 (HMM E-Value=1.5)
Length = 589
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P+Q +SD
Sbjct: 103 KPGFPRSLTLAQKLLYAVPAAPVQSTASD 131
>SB_59744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 47 KPGFPRSLTLAQKLLYAVPATPVESMASD 75
>SB_53945| Best HMM Match : POPLD (HMM E-Value=1)
Length = 465
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 254 KPGFPRSLTLAQKLLYAVPATPMESTASD 282
>SB_40511| Best HMM Match : POPLD (HMM E-Value=6.4)
Length = 294
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 128 KPGFPRSLTLAQKLLYAVPATPVESMASD 156
>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
Length = 751
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 230 KPGFPRFLTLAQKLLYAVPATPVESTASD 258
>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
Length = 754
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 256 KPGFPRFLTLAQKLLYAVPATPVESTASD 284
>SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7)
Length = 403
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 122 KPGFPRSPTLAQKLLYAVPATPVESTASD 150
>SB_51673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 37 KPGFPRSLTLAQKLLYAVPATPVESTASD 65
>SB_49474| Best HMM Match : DUF156 (HMM E-Value=5.2)
Length = 660
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 52 KPGFPRSLTLAQKLLYAVPATPVESTASD 80
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 257 KPGFPRSLTLAQKLLYAVPATPVESTASD 285
>SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1)
Length = 486
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 49 KPGFPRSLTLAQKLLYAVPATPVESTASD 77
>SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3)
Length = 306
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 79 KPGFPRSLTLAQKLLYAVPATPVESTASD 107
>SB_10503| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
Length = 787
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 SNIGTRPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
S + G PR TLA + +AVP +P++R +SD
Sbjct: 108 SRTSQKTGFPRSLTLAQKLLYAVPATPVERTASD 141
>SB_371| Best HMM Match : DUF156 (HMM E-Value=4.6)
Length = 417
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 49 KPGFPRSLTLAQKLLYAVPATPVESTASD 77
>SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 345 KPGFPRSLTLAQKLLYAVPATPVESTASD 373
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 168 KPGFPRSLTLAQKLLYAVPATPVESTASD 196
>SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 443 KPGFPRSLTLAQKLLYAVPATPVESTASD 471
>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TLA + +AVP +P++ +SD
Sbjct: 88 KPGFPRSLTLAQKLLYAVPATPVESTASD 116
>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 694
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVP-SPLQRYSSD 393
+PG PR TL + +AVP +PL+ +SD
Sbjct: 394 KPGFPRSLTLTQKLLYAVPATPLESTASD 422
>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
Length = 361
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 384 ITLQWTRHREWTTMSKCRDSRETGAR 307
+ L + R+RE++T S RD+RE AR
Sbjct: 6 VYLVFDRYREYSTKSSTRDARECKAR 31
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 310 RPGLPRVSTLAHRRPFAVPSP 372
+PG PR TLA + +AVP+P
Sbjct: 307 KPGFPRSLTLAQKLFYAVPAP 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,596
Number of Sequences: 59808
Number of extensions: 303854
Number of successful extensions: 746
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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