Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0562
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical
           protein F36H5.5 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 28  ISFSHICAFSQILNSYRYYTFKPEETLNRK-NKTNHTTSLLAFPPKSPLHIFLFI 189
           +S S +C F+   N Y +++FK  E + RK N+ N T +   F  +S L  F  I
Sbjct: 69  VSDSLMCDFTINGNDYYFFSFKNGEVIVRKRNQENITFTAPPFDERSWLDHFFHI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,704
Number of Sequences: 27780
Number of extensions: 242631
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)