Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0562
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 292 FKNISTKYYYLFKLYGL 242
           FK++  KYY  +K+Y L
Sbjct: 398 FKDLQDKYYEEYKMYEL 414


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 505 FX*SISQNRYIRAAHIGSVMKSI 437
           F  + + N +IR  H GS+ +SI
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSI 130


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 505 FX*SISQNRYIRAAHIGSVMKSI 437
           F  + + N +IR  H GS+ +SI
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSI 130


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 505 FX*SISQNRYIRAAHIGSVMKSI 437
           F  + + N +IR  H GS+ +SI
Sbjct: 47  FHIATTSNEFIRIHHSGSITRSI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,523
Number of Sequences: 438
Number of extensions: 3344
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)