Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0559
(476 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 24 0.83
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 24 0.83
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 24 0.83
DQ493452-1|ABF48588.1| 305|Tribolium castaneum hedgehog protein. 23 1.9
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 23 1.9
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 23 1.9
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 23 1.9
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 23 1.9
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 22 3.3
EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetyla... 21 4.4
DQ659253-1|ABG47451.1| 439|Tribolium castaneum imaginal disc gr... 21 4.4
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 23.8 bits (49), Expect = 0.83
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 250 RHHIRVINRHAHYFSNSIRFQ 188
RHH V + H H+F + ++Q
Sbjct: 117 RHHEEVADGHQHHFLHENKYQ 137
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 23.8 bits (49), Expect = 0.83
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 250 RHHIRVINRHAHYFSNSIRFQ 188
RHH V + H H+F + ++Q
Sbjct: 117 RHHEEVADGHQHHFLHENKYQ 137
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 23.8 bits (49), Expect = 0.83
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 250 RHHIRVINRHAHYFSNSIRFQ 188
RHH V + H H+F + ++Q
Sbjct: 117 RHHEEVADGHQHHFLHENKYQ 137
>DQ493452-1|ABF48588.1| 305|Tribolium castaneum hedgehog protein.
Length = 305
Score = 22.6 bits (46), Expect = 1.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 109 YNLLSRRQLTNIHLISGRIFE*ISSRQLIXD 17
YN +RQ +I L SGR S L+ D
Sbjct: 157 YNPSQKRQFLHITLASGRTLTVTPSHLLVLD 187
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 8 RIKVGDQLPAADLFEDSPANK 70
R V +PA D+FE+ NK
Sbjct: 1507 RNSVASSIPAKDVFENGHVNK 1527
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 8 RIKVGDQLPAADLFEDSPANK 70
R V +PA D+FE+ NK
Sbjct: 1507 RNSVASSIPAKDVFENGHVNK 1527
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 22.6 bits (46), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 8 RIKVGDQLPAADLFEDSPANK 70
R V +PA D+FE+ NK
Sbjct: 1507 RNSVASSIPAKDVFENGHVNK 1527
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 22.6 bits (46), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 8 RIKVGDQLPAADLFEDSPANK 70
R V +PA D+FE+ NK
Sbjct: 1507 RNSVASSIPAKDVFENGHVNK 1527
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 254 KPPSHTGH*QTRT 216
+PPS T H QT+T
Sbjct: 1175 RPPSTTNHWQTKT 1187
>EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetylase
1 protein.
Length = 534
Score = 21.4 bits (43), Expect = 4.4
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 164 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWELSTTLKERCVC 292
G N +K SDG E C NDP + + + C C
Sbjct: 133 GLFCNGEKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFC 175
>DQ659253-1|ABG47451.1| 439|Tribolium castaneum imaginal disc
growth factor 2 protein.
Length = 439
Score = 21.4 bits (43), Expect = 4.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 125 GAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVND 235
G F G T GY + K K G IV +S++D
Sbjct: 383 GGFWVGYEDTDTAGYKASYVKAKGLGGIAIVDLSLDD 419
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,735
Number of Sequences: 336
Number of extensions: 2613
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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