Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0559
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    65   5e-12
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    44   2e-05
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   0.64 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   1.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   5.8  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   7.9  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   7.9  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   7.9  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 33/85 (38%), Positives = 49/85 (57%)
 Frame = +2

Query: 11  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 190
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 191 KSDGVAEIVCVSVNDPYVMAAWELS 265
            + G++ I  V+VND +V  AW+ S
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKS 82



 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 283 VRMLADPSGNFIKALDLGTNLPXL-GGFRSKRFSMVIVDSKVQDLNVEPDGTGLSXSLAD 459
           V  +AD +G F KA D G +   L G  RSKR++ V+ + KV  + +E + T +  S AD
Sbjct: 91  VHFVADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSAD 150

Query: 460 KI 465
           K+
Sbjct: 151 KV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +2

Query: 11  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 190
           I+VGD +P   L  D     + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 191 KS 196
           ++
Sbjct: 104 QA 105


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 65  NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 235
           NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 217 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 128
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 205 NSIRFQFICVLYVSRQVCFRTSRG 134
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect(2) = 5.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 359 PPSXGRLVPRSRALMKLPLGSASIRTFPLVLC*APKPPS 243
           PP+    +P   A    PLG+AS  + P V    P PPS
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPV----PTPPS 422



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 125 PAPQIIQPSFPPSTHKYSP 69
           P P  + PS PPS    +P
Sbjct: 418 PTPPSLPPSAPPSLPPSAP 436


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 176 NADKLKSDGVAEIVCVSVND 235
           N D +   G A++VCV VND
Sbjct: 35  NKDTVSLAGKAQVVCVFVND 54


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176 NADKLKSDGVAEIVCVSVNDPYVMAAWELSTTLK 277
           + ++LK++G   I  V    PY  A++E+  TLK
Sbjct: 203 DTNELKTNGFEPIRFVFTTTPYSPASFEVPKTLK 236


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 107 QPSF-PPSTHKYSPY*RENLRINQQQAADXRP 15
           QP+F PPS + Y P    N  I     +D RP
Sbjct: 278 QPTFQPPSANVYQPASNANQVITPVSISDYRP 309


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 353 SEVSAPKGSRWSSLTARSKI 412
           S +S+P G+R SS+T ++K+
Sbjct: 4   SSLSSPSGARVSSVTVKNKV 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,740
Number of Sequences: 5004
Number of extensions: 40402
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)