Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0559
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0691 - 5167260-5167937 101 4e-22
06_03_0811 + 24830496-24831194 99 9e-22
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 95 3e-20
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 79 2e-15
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 39 0.002
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.64
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 30 1.1
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.5
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 1.5
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 1.5
06_01_0671 - 4899611-4899829,4900870-4901448 29 1.5
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 4.5
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 27 5.9
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 27 7.8
02_05_0541 - 29866396-29866881 27 7.8
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 27 7.8
01_05_0691 + 24330491-24332269 27 7.8
>02_01_0691 - 5167260-5167937
Length = 225
Score = 101 bits (241), Expect = 4e-22
Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Frame = +2
Query: 11 IKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 178
I VGD+LP A L PA+ V + ELTAG+K VLFAVPGAFTP CS+ HLPG+++
Sbjct: 63 IAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEK 122
Query: 179 ADKLKSDGVAEIVCVSVNDPYVMAAWELSTTL 274
A +L + GV I CVSVND +VM AW+ S L
Sbjct: 123 AGELHAKGVDAIACVSVNDAFVMRAWKESLGL 154
>06_03_0811 + 24830496-24831194
Length = 232
Score = 99 bits (238), Expect = 9e-22
Identities = 50/89 (56%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Frame = +2
Query: 11 IKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 178
I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAFTP C++ H+PG+V
Sbjct: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
Query: 179 ADKLKSDGVAEIVCVSVNDPYVMAAWELS 265
A +L++ GV + CVSVND +VM AW+ S
Sbjct: 131 AGELRAKGVDAVACVSVNDAFVMRAWKES 159
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 94.7 bits (225), Expect = 3e-20
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Frame = +2
Query: 11 IKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNA 181
+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++ A
Sbjct: 4 VAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQA 63
Query: 182 DKLKSDGVAEIVCVSVNDPYVMAAWELS 265
++LK+ GV +I+ VSVNDP+VM AW S
Sbjct: 64 EQLKAKGVDDILLVSVNDPFVMKAWAKS 91
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 283 VRMLADPSGNFIKALDLGTNLPXLG-GFRSKRFSMVIVDSKVQDLNVEPDG 432
V+ LAD G + KAL L +L G G RS+RF+++ + KV N+E G
Sbjct: 98 VKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 78.6 bits (185), Expect = 2e-15
Identities = 31/54 (57%), Positives = 40/54 (74%)
Frame = +2
Query: 95 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 256
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGW 123
Score = 35.1 bits (77), Expect = 0.030
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 235 PVCDGGLGAQHNTKGKVRMLADPSGNFIKALDLGTNL-PXLGGFRSKRFSMVIVDSKVQD 411
P G + K + D G+F K+LDL +L L G RS R+S + D K++
Sbjct: 117 PYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKA 176
Query: 412 LNVE 423
NVE
Sbjct: 177 FNVE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSK--THLPGYVQNAD 184
+ +GD +P +L DS K+ I + V+LF+ PG FTP C+ + GY + D
Sbjct: 39 LTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFD 96
Query: 185 K 187
K
Sbjct: 97 K 97
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = -2
Query: 457 RRENXTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAXADWCPGPEP 320
RRE T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 225 LLMTRM*WRLGSSAQH*RKGAYASRSQRQLHQGSG-PGHQSAXARRFPLQKV 377
L+++ + WR+G+ ++SR R H G+G GH +A A R L V
Sbjct: 190 LVLSTLGWRMGAVTPFDFLPCFSSRLHRHHHGGAGAAGHGAAAAARVALNAV 241
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 296 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 400
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 438 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 283
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 116 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWE 259
A+ G P C H+ + K +S V V + YV+A WE
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWE 187
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 95 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVND 235
G+ VV++ P TPGC+K + + +K K G AE++ +S +D
Sbjct: 144 GRPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAG-AEVIGISGDD 188
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 159 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 31
K VLEHP +K TA N + AV +++ A K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 47 FEDSPANKVNIC--ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVC 220
FE P N E GK L G G SK+ P + L+ DG E+ C
Sbjct: 345 FESWPVNSAGSAGAEEGRGKVAALLKQQGVDIKGASKSSAPVDEEVPPLLEGDGKLEVYC 404
Query: 221 VS 226
V+
Sbjct: 405 VN 406
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 123 GTANNTTFFPAVNSQIFT--LLAGESSNKSAAGS*SPTLILVP 1
GTA TT P+ S +FT +AG SN S G+ PT + P
Sbjct: 334 GTATTTTADPSSGSCVFTGSSMAG-GSNTSVPGASPPTTLSPP 375
>02_05_0541 - 29866396-29866881
Length = 161
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 263 STTLKERCVC*PIPAATSSRLWTWAPICRRSEVSA 367
S T RC+ PIP S+ L T A RR V+A
Sbjct: 12 SPTPSSRCLLLPIPVVVSTFLQTLAIALRRCSVTA 46
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 250 GLGAQHNTKGKVRMLADPSGNFIKALDL 333
G G Q+N K K +ADPS + LD+
Sbjct: 472 GAGNQNNVKDKEISIADPSPQHVSLLDV 499
>01_05_0691 + 24330491-24332269
Length = 592
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +2
Query: 236 PYVMAAWELSTTLKERCVC*PIPAATSSRLWTWAPICRRSEVSA 367
P + + ++ C P PAA S+ W W P+ S S+
Sbjct: 28 PSPASPFAIAAAAAAACPAKPPPAAPSTGRWIWLPLLSSSRYSS 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,093
Number of Sequences: 37544
Number of extensions: 323132
Number of successful extensions: 861
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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