Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0559
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          81   6e-16
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   1.1  
SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)              29   1.5  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   2.0  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)                       29   2.6  
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)                   28   3.4  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           28   4.5  
SB_36421| Best HMM Match : DUF433 (HMM E-Value=1.1)                    28   4.5  
SB_29153| Best HMM Match : DUF433 (HMM E-Value=1.1)                    28   4.5  
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   28   4.5  
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   27   6.0  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = +2

Query: 68  KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVM 247
           KV+   L AGK VVLFA+PGAFTP CS THLP Y + A   K+ GV +I+C+SVND +VM
Sbjct: 25  KVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVDDIICLSVNDTFVM 84

Query: 248 AAW 256
            +W
Sbjct: 85  NSW 87



 Score = 33.9 bits (74), Expect = 0.069
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 283 VRMLADPSGNFIKALDLGTNLPXLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSXSLAD 459
           +  + D +G F + + +  +   LG G RS R+SM++ D  ++ + +EPD  G    ++D
Sbjct: 96  ITFIPDGNGEFSEGMGMLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
 Frame = +1

Query: 319 KALDLGTNL-PXLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSXSLADKI 465
           KA+DL  +  P LG  RSKR++M++ D  V+ L+VEPDGTGL+ SL++ I
Sbjct: 84  KAVDLELDATPFLGNIRSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 188 LKSDGVAEIVCVSVNDPYVMAAW 256
           +KS GV  + C++VNDP+VM+AW
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAW 75


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = -3

Query: 345  QIGAQVQSLDEVAAGIG*HTHLSFSVVLSSQAAITYGSLTDTHTISATPSDFSLSAFCTY 166
            Q+ +   S  +V   +   THL+ SV  S+QAA +   L+   T S T S     +  + 
Sbjct: 1821 QLASSAASSTQVTRSVASSTHLTPSVASSTQAASSV-ILSAEVTTSVTSSTQVTPSVASS 1879

Query: 165  PGKCVLEHPGVKA-PGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTLILVP 1
                    P  +  P  A +T   P+V S    +    +S+  AA S +P+ ++ P
Sbjct: 1880 TQAATSVTPSTQGMPSVAPSTQMTPSVASST-QVTPSVASSTQAAPSVTPSTLMTP 1934


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 128 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 232
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)
          Length = 375

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
 Frame = -3

Query: 468 FDLIGERTR----QASAIGLHIQILDLAVNDDHREP---FGAETSERRQIGAQVQSLDEV 310
           F ++G+  +    +   +G H+Q +D  V D  ++    F     E + +G  VQS+DE 
Sbjct: 5   FQVVGQHVQSLDEKVGVVGQHVQSIDEKVQDAEQKVTKGFQEVGKEFQVVGQHVQSVDEK 64

Query: 309 AAGIG*HTHLSFSVVLSSQAAITYG 235
              +  H       V  ++  +T G
Sbjct: 65  VGVVAQHVQSIDEKVQDAEQKVTMG 89



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = -3

Query: 468 FDLIGERTR----QASAIGLHIQILDLAVNDDHREP---FGAETSERRQIGAQVQSLDEV 310
           F ++G+  +    +   +  H+Q +D  V D  ++    F     E + +G  VQS+DE 
Sbjct: 51  FQVVGQHVQSVDEKVGVVAQHVQSIDEKVQDAEQKVTMGFQEVGKEFQVVGQHVQSVDEK 110

Query: 309 AAGIG*HTHLSFSVVLSSQAAITYG 235
              +  H       V  ++  +T G
Sbjct: 111 VGVVAQHVQSVDEKVQDAEQKVTMG 135


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 262  QHNTKGKVRMLADPSGNFIKALDLGTNLPXLGGFRSKRFSMVIVDSKVQ 408
            QHNT+ K+ ++A+ +  +    + G +   L     KR+S  +VDSK +
Sbjct: 908  QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 316 IKALDLGTNLPXLGGFRSKRFSMVIVDSKVQDL 414
           ++A+DL TN+  +G  R+  F +  VD +V+D+
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
          Length = 178

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 194 ISVYLRSVRIPASVF*NIPG*RRPAPQII 108
           +SVY  S  +P +VF  +PG R P P ++
Sbjct: 24  LSVYKASELLPRTVFIRVPGGRCPCPHLL 52


>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
          Length = 340

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -3

Query: 264 LSSQAAITYGSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 85
           L +   I+  S T ++ ++A PSD+  +  CTY  + V       +P   ++ T     N
Sbjct: 135 LGTHTGISGASHTFSNEVTAVPSDYQNNVGCTYTARVVCCQGDSPSPRWRHSATTLITGN 194

Query: 84  SQIFTLLAG 58
                L+ G
Sbjct: 195 GDEGVLVIG 203


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 237 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 112
           GSL +  TI+++  +F+++A   +PG   +    V  P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240


>SB_36421| Best HMM Match : DUF433 (HMM E-Value=1.1)
          Length = 444

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 282 LSFSVVLSSQAAITYGSLTDTHTISATPS 196
           +S SV LSS  ++T  SLT +   S++PS
Sbjct: 186 MSLSVALSSSTSLTNSSLTSSSISSSSPS 214


>SB_29153| Best HMM Match : DUF433 (HMM E-Value=1.1)
          Length = 680

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 282 LSFSVVLSSQAAITYGSLTDTHTISATPS 196
           +S SV LSS  ++T  SLT +   S++PS
Sbjct: 186 MSLSVALSSSTSLTNSSLTSSSISSSSPS 214


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 264 LSSQAAITYGSLTDTHTISATPSDFSLSAFCTYPGKCV 151
           L +   I+  S T ++ ++A PSD+  +  CTY  + V
Sbjct: 360 LGTHTGISGASHTFSNEVTAVPSDYQNNVGCTYTARVV 397


>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 268

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 125 PAPQIIQPSFPPSTHKYSP 69
           P+  + QPS  PSTH YSP
Sbjct: 149 PSQSLYQPSPHPSTHLYSP 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,578,596
Number of Sequences: 59808
Number of extensions: 339323
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)