Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0559
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   3.0  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   5.3  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    27   7.0  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    27   7.0  

>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 138 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 13
           G    G+  N  F P    ++  LLAGE++ KS +G  S  L
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 198 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 85
           +DF   A C+   K   EH G + P     T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 217 HYFSNSIRFQFICVLYVSRQVCFRTSRGEGARHRK 113
           H+F+  I   FICV  VS +   RT+R  G +++K
Sbjct: 129 HFFNIPISLYFICVFLVSSKTHKRTTR-SGRKNKK 162


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 243 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 154
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 143 IPG*RRPAPQIIQPSFPPS 87
           +P   RPAPQ +QPSF P+
Sbjct: 294 VPQPVRPAPQPVQPSFQPA 312


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 462 LIGERTRQASAIGLHIQILDLAVNDDHREPFGAETSERR 346
           L GERT + S  G H+  + LA +   R P  A   ERR
Sbjct: 125 LEGERTNRCSVCGSHLLGMPLADHSYIRCPLDALEGERR 163


>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 210 SATPSDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPA 91
           S  PS F  S  CT P K + + P      TA+  T  P+
Sbjct: 259 SPIPSGFWFSTNCTRPAKYICKRPAGVQSTTASPVTVAPS 298


>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 53  DSPANKVNICELTAGKKVVLFAVPGAFTPG 142
           D+P NK+ + +LT+     L A PG+   G
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG 168


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 53  DSPANKVNICELTAGKKVVLFAVPGAFTPG 142
           D+P NK+ + +LT+     L A PG+   G
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,875
Number of Sequences: 27780
Number of extensions: 245930
Number of successful extensions: 703
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)