Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0557
         (547 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TQ92 Cluster: ENSANGP00000029616; n=2; Culicidae|Rep:...    33   3.3  
UniRef50_UPI00006CB1A0 Cluster: EF hand family protein; n=1; Tet...    32   9.9  

>UniRef50_Q5TQ92 Cluster: ENSANGP00000029616; n=2; Culicidae|Rep:
           ENSANGP00000029616 - Anopheles gambiae str. PEST
          Length = 241

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 177 RLERRLCVVSRSVGGIRIRSLQRDAHWELVLLMYAL*HSVWRDSRTVGGRA 25
           R E  +CV++R+ G +R+R++      E  L    + H  W  +R  GG A
Sbjct: 123 RYEDEICVIARAYGELRLRNVPLSEPMESYLTEILINHDYWLRNRVRGGWA 173


>UniRef50_UPI00006CB1A0 Cluster: EF hand family protein; n=1;
            Tetrahymena thermophila SB210|Rep: EF hand family protein
            - Tetrahymena thermophila SB210
          Length = 3082

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 385  ILVLIYRNLPLSVSRVITFIHXKMISNVQNTRLKIASXSTVXRKV 519
            +L LI+ N P+ V ++I  +  K+  N+Q T + I++ S+V   V
Sbjct: 2562 LLKLIFDNFPMLVLKIIFLMDKKVSDNLQQTSIIISAISSVINAV 2606


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,433,096
Number of Sequences: 1657284
Number of extensions: 7387803
Number of successful extensions: 14251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14251
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)