Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0557
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.0  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 149 ETTHNRLSSLPKE 187
           +T+HNR+S +P +
Sbjct: 302 DTSHNRISEIPND 314


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 162 LCVVSRSVGGIRIRSL 115
           LCVV+ SVGG  + ++
Sbjct: 306 LCVVNNSVGGESVETV 321


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 299 SNFIHTFLEHFPSENSDNCVIAPYLIKTTV 210
           S F+  FLEH+   N      A     TTV
Sbjct: 230 STFLQLFLEHYEVINRQTLDTADVKTLTTV 259


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 299 SNFIHTFLEHFPSENSDNCVIAPYLIKTTV 210
           S F+  FLEH+   N      A     TTV
Sbjct: 156 STFLQLFLEHYEVINRQTLDTADVKTLTTV 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,284
Number of Sequences: 336
Number of extensions: 2067
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)