Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0557
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    28   4.2  
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     27   7.4  
01_06_0449 - 29468797-29469090                                         27   7.4  

>05_07_0059 +
           27402365-27402733,27402848-27402982,27403070-27403183,
           27403297-27403449,27403544-27403644,27403945-27404041,
           27404542-27404651,27404775-27404878,27405129-27405308,
           27405398-27405741,27405841-27405905,27405981-27406450,
           27406939-27407793,27408045-27408116,27408475-27408575,
           27409069-27409170,27409295-27409456,27409665-27411230,
           27411384-27411602,27413924-27414198,27414291-27414596,
           27414727-27415012,27415085-27415087,27415162-27415416,
           27415537-27415803
          Length = 2236

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 370 YKGLVILVLIYRN-LPLSVSRVITFIHXKMISNVQNTRLKIASXSTVXRKVH 522
           ++G  ILVL  R  + +S    +  +H  ++S+++ TR+ +   S   R+VH
Sbjct: 736 HEGYTILVLSDRERVAVSSLLAVGAVHQHLVSHLERTRIGLLVESAEPREVH 787


>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 1    RHEARRLARSPADCSRIPPD 60
            R  AR LARSP + +R+P D
Sbjct: 1861 RSRARLLARSPGEAARVPSD 1880


>01_06_0449 - 29468797-29469090
          Length = 97

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 62  LCYRAYINKTNSQCASRCKDLIRIPPTERETTHNRLSSLPKEKRGQRVTIPL 217
           LC R  I    +QC+ +C++   +   E         +LP E  G     PL
Sbjct: 37  LCMRTRIPSIEAQCSGKCRETACVRSCEEACARKGFPALPGEGIGACELEPL 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,368
Number of Sequences: 37544
Number of extensions: 197920
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)