Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0557
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   2.5  
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 44  RESRQTLCYRAYINKTNSQCASRCKDLIRIPPTERETTHNRLSSLPKEKRGQRVTIPLF 220
           R+  Q  CYR   N    +C   CK   R    E    H R  +  +++R Q+  I L+
Sbjct: 522 RKKMQFPCYRVQSNDVKVECDDECKAAKRRQEEENAAAHRR--TREEQERAQKAEIALY 578


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 77  YINKTNSQCASRCKDLIRIPP-TERETTHNRLSSLPKEKRGQRVTIPLF*LDTEQ*HNCL 253
           +IN  N Q  ++   +++    TER+T  NRL  L KEK  Q   +     + ++    L
Sbjct: 616 HINSLNPQTRNKIIQVLKEEAQTERQTKSNRLQELWKEKASQSGKLVKLRCEEKEQEQQL 675

Query: 254 NSQKEN 271
              +EN
Sbjct: 676 GKTREN 681


>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 47  ESRQTLCYRAYINKTNSQCASRCKDLIRIPPTERETTHNRLSSL 178
           E+++ LCY          C ++C   +++P T ++   + L SL
Sbjct: 20  ENQEGLCYGEISKFAEETCNTKCACAVKVPATSQQRVEDPLLSL 63


>SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 9  GAPASALARRLFANPARHYVIEHTSIKL 92
          G   S  ARR F NPA H +I  T + L
Sbjct: 5  GEKKSHFARRSFVNPALHQLISKTYLSL 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,291
Number of Sequences: 59808
Number of extensions: 246128
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)