Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0557
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    29   1.5  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    29   2.0  
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    27   8.2  
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    27   8.2  

>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
            domain-containing protein / HNH endonuclease
            domain-containing protein similar to HepA-related protein
            HARP [Homo sapiens] GI:6693791; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF01844: HNH endonuclease
          Length = 1190

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47   ESRQTLCYRAYINKTNSQCASRCKDLIRIPPTER-ETTHNRLSSLPKEK 190
            E+ +TLC   + + T +QCA R   LIR    ++ + T N L + PK+K
Sbjct: 1102 ENMRTLCVACHADVTAAQCAER--KLIRSKARKQLKNTLNELRNNPKQK 1148


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 272 HFPSENSDNCVI--APYLIKTTVSSHVDHVFL*ED*KD 165
           H+PSEN+  C+   AP++I   ++ H+D VF  E  K+
Sbjct: 115 HWPSENA-GCIFFNAPFVICLYITGHLDKVFSEEHRKE 151


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|O14981
           TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
           sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 2049

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +3

Query: 15  PASALARRLFANPARHYVIEHTSIKLTPNV---RPAVRILSVSRQ 140
           PA+ +  RL+AN + H++ +  S ++ P V   RP+ R L++ ++
Sbjct: 195 PANGVGNRLYANCSPHHIQQFVS-RMVPRVNSRRPSARELNLLKR 238


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 69  IEHTSIKLTPNVRPAVRILSVSRQLSERQHT 161
           ++  ++   PNV  + ++L +SR  S++QH+
Sbjct: 471 LDRNAVSYVPNVYQSTQMLPLSRDFSKQQHS 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,362,990
Number of Sequences: 28952
Number of extensions: 161457
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)