Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0556
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.2  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   5.6  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   5.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.3  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.3  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   7.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 322 LGHPRWP 302
           LGHP+WP
Sbjct: 76  LGHPQWP 82


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 259 MEKMSLGKALSILSKAIEDALIKVIFIMNVLLFVLKDGSKVNWYRLRHI*NT 414
           ++K S  K LS +   I+ A   V+FI+N+   ++    K  W  L  I  T
Sbjct: 334 VQKASYEK-LSPVVLFIQVAADTVLFILNISTIIITARKKQQWNSLIKILKT 384


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 255 ENGKDEPWEGFVDP 296
           ENG+   W G+ DP
Sbjct: 371 ENGEGGAWVGYEDP 384


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 VPTETYLEHKEKVLELWPLPPGWEEVFD 470
           +P +  L+  EKV  +W L   +  V D
Sbjct: 252 LPVDKLLQISEKVANIWGLKKVYAPVVD 279


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 510 YVHNSKNNVDHNLHQTLLPIL 448
           Y+++ +  V  N H   LP+L
Sbjct: 264 YIYDDEMVVPQNFHDIFLPLL 284


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 376 CFHLLIQKVEH 344
           C HL++Q+V H
Sbjct: 177 CAHLILQRVNH 187


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 416 LVF*ICLSRYQFTLLPSFNTKSRTFMINITFIRASSMAF 300
           LVF  C   Y FT+   + +     +IN  +  A  M F
Sbjct: 143 LVFVFCYFIYLFTVYYIYYSVHEASIINFGYTLAKFMIF 181


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 510 YVHNSKNNVDHNLHQTLLPIL 448
           Y+++ +  V  N H   LP+L
Sbjct: 89  YIYDDEMVVPQNFHDIFLPLL 109


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 277 GKALSILSKAIEDALIKVIFIMNVLLFVL 363
           G  + +    +ED L  V F+ ++L+F +
Sbjct: 219 GSIVFVCFSLVEDTLPCVFFLGSILIFFI 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,420
Number of Sequences: 336
Number of extensions: 2802
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)