Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0556
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 29 0.63
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 4.4
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 4.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.4
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 26 4.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.4
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 25 7.7
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 7.7
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.7
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 28.7 bits (61), Expect = 0.63
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNC-----AHNLGSWIPPGHSRAVPTESA 566
PLPPGW E G Y+WN + S+I HS +V A
Sbjct: 4 PLPPGWTE-HKAPSGIPYYWNAELKKSTYQRPSFIEKNHSSSVTASQA 50
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPGHSRAVPTESA 566
LPPGWE D G+ Y+ + +WI P S +A
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRPNLSSVAGAAAA 247
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
LPPGWE+ + G+ YF + +W+ P
Sbjct: 290 LPPGWEQRYTP-EGRPYFVDHNTRTTTWVDP 319
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 414 KEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
++ +E PLP GWE E Y YF + + +W P
Sbjct: 235 QQVAVEKGPLPAGWEMRLSEDY-HVYFVDHSTKTTTWSDP 273
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWN-CAHN-LGSWIPP 533
LP GW +D YG +++ N A N W PP
Sbjct: 10 LPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -2
Query: 536 SGWYPRTQIMCTIPKI-MLTITFIKHFFPSWW 444
+GW P T + C I T TF H P+ W
Sbjct: 47 AGWMPNTPVPCKITVTPQRTFTFTIHTPPTSW 78
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 285 FVDPVK-GHRGCPNKSNIYHECSTFCIKRWKQG 380
+VDP + G +GCP S I + FC+ ++QG
Sbjct: 294 YVDPRENGVQGCPEGSPIGAGGACFCVVGFQQG 326
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 327 SNIYHECSTFCIKRWKQGKLVPTETYLEH 413
S I EC F ++RW+Q +P Y H
Sbjct: 2680 SRIIDECMQFSLRRWQQ---LPKRVYQSH 2705
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 324 KSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLP 446
KSN+ H+ ST +P+ +YL H+ K+ W +P
Sbjct: 150 KSNVEHK-STSQANDAVNKSFLPSVSYLIHQYKIENPWSIP 189
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 531 VVSTNPDYVHNSKNNVDHNLHQTLLPILVARAIAL 427
V S+N + NS NN+ HN +L+ +++ + L
Sbjct: 182 VPSSNSSSLLNSTNNISHNPQVSLMSASLSKNLVL 216
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 7.7
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -1
Query: 519 NPDYVHNSKNNVDHNLHQT 463
N +++H+S+ +DH +H+T
Sbjct: 244 NNEFLHDSEKLIDHLIHET 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,430
Number of Sequences: 5004
Number of extensions: 47649
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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