Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0556
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 36 0.023
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 34 0.069
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722... 33 0.21
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 31 0.64
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 29 2.0
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 2.0
12_01_0794 + 7285100-7285369,7285931-7286338 29 2.6
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 29 2.6
11_03_0142 + 10675764-10675991,10676533-10676943 29 3.4
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 3.4
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 28 4.5
05_02_0163 - 7220885-7220997,7221026-7221082,7221208-7221309,722... 27 7.9
02_05_0778 + 31695036-31695137,31695204-31695683 27 7.9
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
LP WEE D+ GQ Y++N W PP
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPG 536
LPPGW E D G YF+N + W PG
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPG 219
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 34.3 bits (75), Expect = 0.069
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 294 PVKGHRGCPNKSNIYHECSTFCIKR 368
P K C N SN YHECS +C+++
Sbjct: 9 PGKSRPDCVNSSNPYHECSDYCLRQ 33
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 306 HRGCPNKSNIYHECSTFCIKRWKQGKLVPT 395
H C N SN YH CS FC +R K P+
Sbjct: 48 HPHCINASNPYHACSNFCFRRIIHAKPSPS 77
>06_03_1362 +
29571324-29571564,29571746-29571921,29571972-29572251,
29572949-29573085,29573174-29573401
Length = 353
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 306 HRGCPNKSNIYHECSTFCIKRWKQGK 383
H C N SN YH CS +C KR K
Sbjct: 54 HPDCINASNPYHVCSEYCFKRIADAK 79
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 300 KGHRGCPNKSNIYHECSTFCIKRWKQGK 383
K C N SN +HECS +C+++ + K
Sbjct: 11 KSRPECINSSNPFHECSDYCLRKIAEAK 38
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 531 VVSTNPDYVHNSKNNVDHNLHQTLLPILVARAIALKLSPCVLNMSQSVPV 382
V++++ D V N K NV L Q L+PIL + + PC++ +S+ V
Sbjct: 519 VINSSKDRVPNIKFNVAKVL-QALIPILDQSVVEKNVKPCLVELSEDPDV 567
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 315 CPNKSNIYHECSTFCIKRWKQ 377
CPN N +HEC+ C + K+
Sbjct: 177 CPNAGNPFHECTEHCAAKMKE 197
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 441 LPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
LPPGWEE FD G+ ++ + +W P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 372 KQGKLVPTETYLEHKEKVLELW-PLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
K+ K E + H L+L PLP WE+ D G+ Y+ N SWI P
Sbjct: 55 KKRKHFTWEEPVSHANLELQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 453 WEEVFDEGYGQHYFWNCAHNLGSWIPP 533
W ++D Y ++YF+N +W PP
Sbjct: 326 WRVLWDPFYSRYYFYNILTQESTWYPP 352
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
PLP WE+ D G+ Y+ N SW+ P
Sbjct: 64 PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 273 PWEGFVDPVKGHRGCPNKSNIY 338
P GF DPV GH G P SN Y
Sbjct: 828 PNAGFTDPVGGH-GAPTSSNAY 848
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 498 NCAHNLGSWIPPGHSRAVPTE 560
N A LG W+PPG R+ P +
Sbjct: 143 NAARQLGVWLPPGKIRSPPPD 163
>05_02_0163 -
7220885-7220997,7221026-7221082,7221208-7221309,
7221337-7221802,7222042-7222355,7222725-7222914
Length = 413
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 206 PTDATAVESAFCFKRPLLAKRAANAGGKGISLCCISCLALIFLW 75
P AV+ + + K A+ KG+ L S L L+F+W
Sbjct: 325 PLQVVAVDQELVIQIERIGKSASETERKGLQLFVSSKLQLVFIW 368
>02_05_0778 + 31695036-31695137,31695204-31695683
Length = 193
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 444 PPGWEEVFDEGYGQHYFWNC 503
PP W V +G G H+ W C
Sbjct: 123 PPCWMRVASDGTGPHHGWYC 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,951
Number of Sequences: 37544
Number of extensions: 304277
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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