Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0556
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21441| Best HMM Match : zf-A20 (HMM E-Value=2.2) 42 3e-04
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 33 0.22
SB_15120| Best HMM Match : Arm (HMM E-Value=0.14) 30 1.5
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2) 29 3.5
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19) 29 3.5
SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55) 29 3.5
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 28 4.6
SB_45392| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_21441| Best HMM Match : zf-A20 (HMM E-Value=2.2)
Length = 308
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 261 GKDEPWEGFVDPVKGHRGCPNKSNIYHECSTFCIKRWKQGKLVPTE 398
G++ E D +GCPN +N YHECS +C KR+ +G + T+
Sbjct: 230 GRESSKEEKTDSSGQCKGCPNTTNPYHECSEYCHKRYGRGAVDHTQ 275
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 414 KEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
KEK E+ PLP GWEE D G+ Y+ + + +WI P
Sbjct: 3 KEKPCEV-PLPVGWEEARDTRDGRVYYIDHYSHRTTWIDP 41
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 408 EHKEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSW-IPPG 536
EH E+ +E P P W+ DE +Y+WN N W +PPG
Sbjct: 101 EHDEEPMEEDPNYP-WQACRDEASNCYYYWNQETNEVQWEMPPG 143
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +3
Query: 360 IKRWKQGKL-----VPTETYLEHKEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
I+ W++G L V E K E PPGW +D Y Q+++ N W
Sbjct: 387 IRDWREGALDSGYLVKKLQEAEEHIKEYEESASPPGWSCHWDRKYKQYFYTNLETKKSQW 446
>SB_15120| Best HMM Match : Arm (HMM E-Value=0.14)
Length = 626
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 445 HQDGKKCLMKV--MVNIIFGIVHIIWVRGYHPDIPVLCLRNL 564
H DG+ LMKV VN++ H+ + + ++ +L LRNL
Sbjct: 546 HTDGQAMLMKVPGCVNVLLEFCHVTHSKQANSELALLVLRNL 587
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPGHSRAVP 554
PLP GWE D G+ +F + +W P ++ P
Sbjct: 7 PLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDPRTNKQTP 45
>SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2)
Length = 671
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
P PP + +V+ + WN NLG+W
Sbjct: 479 PTPPKYRDVWRAAQVESKVWNSRENLGAW 507
>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
Length = 1390
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
P PP + +V+ + WN NLG+W
Sbjct: 602 PTPPKYRDVWRAAQVESKVWNSRENLGAW 630
>SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55)
Length = 1346
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
P PP + +V+ + WN NLG+W
Sbjct: 479 PTPPKYRDVWRAAQVESKVWNSRENLGAW 507
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
P PP + +V+ + WN NLG+W
Sbjct: 579 PTPPKYRDVWRAAQVESKVWNSRENLGAW 607
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSW 524
P PP + +V+ + WN NLG+W
Sbjct: 1270 PTPPKYRDVWRAAQVESKVWNSRENLGAW 1298
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGS 521
P PP + +V+ G+ WN NLG+
Sbjct: 444 PTPPKYRDVWRAAQGESKMWNSRENLGA 471
>SB_45392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 468 DEGYGQHYFWNCAHNLGSWIPPGHSRAVPT 557
DE G+ A ++GSW+ P HS+ PT
Sbjct: 35 DEAEGEGEDGEEASSVGSWLLPSHSKQPPT 64
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 438 PLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
PLPPGWE+ D +G+ Y+ + +W P
Sbjct: 382 PLPPGWEQRVDP-HGRIYYVDHNSRTTAWERP 412
>SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 366 RWKQGKLVPTETYLEHKEKVLEL--WPLPPGWEEVFD 470
RW++ + TE++ EHK KVL+ W P W + D
Sbjct: 184 RWRKPR---TESFQEHKTKVLQFAEWWKPYDWTQRID 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,370
Number of Sequences: 59808
Number of extensions: 351831
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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