Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0556
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-2|AAC48091.2|  280|Caenorhabditis elegans Hypothetical ...    87   6e-18
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical ...    29   1.8  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    29   1.8  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    29   1.8  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    28   5.4  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    28   5.4  
Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor pro...    27   7.1  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF016687-2|AAC48091.2|  280|Caenorhabditis elegans Hypothetical
           protein T21D12.3 protein.
          Length = 280

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
 Frame = +3

Query: 255 ENGKDEPWE-GFVDPVKGHRGCPNKSNIYHECSTFCIKRWKQG--KLVPTETYLEHKEKV 425
           EN + EP +  F +   G  GCPNK N YH C  FC   W  G  +    E Y+++K ++
Sbjct: 26  ENYEKEPEKKSFEENSAGAPGCPNKWNQYHVCLEFCYDHWGDGTPEYRLPERYVQNKNRM 85

Query: 426 LELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPGHSRAVPTESA 566
           L  +PLP  W EV+DEG  ++YFWN   +   W  P H RA+ ++ A
Sbjct: 86  LAKFPLPENWVEVYDEGLAKYYFWNKTTDEVCWYSPRHPRAIISDPA 132


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 LPPGWEEVFDEGYGQHY 491
           LPPGWE+V D+ YG  Y
Sbjct: 332 LPPGWEQVDDQNYGTFY 348


>AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical
           protein Y92H12BM.1 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 453 WEEVFDEGYGQHYFWNCAHNLGSWIPP 533
           W E+FD   G++Y++N + ++  W  P
Sbjct: 8   WWELFDSKTGRYYYYNASSSVTKWQKP 34


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 432 LWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
           L PLP GWE+  D    + YF N  +    W  P
Sbjct: 323 LGPLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 432 LWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPP 533
           L PLP GWE+  D    + YF N  +    W  P
Sbjct: 323 LGPLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
            germline protein5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 291  DPVKGHRGCPNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGW 455
            DP +G+R   +  N+Y   S+ C ++  +  +V  E  +  KE + E+  + P W
Sbjct: 1094 DPQEGYRTLTDGQNVYIHPSSACFQQQPEW-VVYHELVMTTKEYMREVTAIDPKW 1147


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
            protein MOG-5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 291  DPVKGHRGCPNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGW 455
            DP +G+R   +  N+Y   S+ C ++  +  +V  E  +  KE + E+  + P W
Sbjct: 1094 DPQEGYRTLTDGQNVYIHPSSACFQQQPEW-VVYHELVMTTKEYMREVTAIDPKW 1147


>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +1

Query: 319 LIKVIFIM--NVLLFVLK-DGSKVNWYRLRHI*NTRRKF*SYGPCHQDGKKCLMKVMVNI 489
           +I ++FI+  N LLF++   G+ +N Y L    +TRR     G      K CL+K + NI
Sbjct: 1   MITMVFIIFANFLLFIISFSGTILNSYLLYKF-STRR-----GVISGFYKLCLVKTVPNI 54

Query: 490 IFGIVHIIW 516
           +     +IW
Sbjct: 55  VVCACFLIW 63


>Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical
           protein C33D3.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 393 TETYLEHKEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPGHSRAV 551
           T TY+ H +    L+P+      + D+ Y  +Y WN A   G  + P     V
Sbjct: 343 TATYVSHAD----LYPVSSAAVTLPDQTYSNYYQWNTAATAGLMMVPNDQNYV 391


>U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor
           protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 393 TETYLEHKEKVLELWPLPPGWEEVFDEGYGQHYFWNCAHNLGSWIPPGHSRAV 551
           T TY+ H +    L+P+      + D+ Y  +Y WN A   G  + P     V
Sbjct: 343 TATYVSHAD----LYPVSSAAVTLPDQTYSNYYQWNTAATAGLMMVPNDQNYV 391


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 105 TTQRNAFTAGVSCSF 149
           TTQ++AFTAG SC F
Sbjct: 60  TTQKSAFTAGKSCFF 74


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 229 AEDYDSKPKKMEKMSL 276
           ++D DS+PKK EKMSL
Sbjct: 146 SDDEDSRPKKPEKMSL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,157,018
Number of Sequences: 27780
Number of extensions: 267580
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)