Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0556
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 292 ILSKAIEDALIKVIFIMNVLLFVLKDGSKVNW 387
           IL    +DA I ++   ++L F+ K+G+  N+
Sbjct: 470 ILDDEHDDAFIGIVNQFHILQFITKNGTSNNY 501


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +3

Query: 318 PNKSNIYHECSTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGWE 458
           PN   I+++     I RWK G       +L++ E         P WE
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWE 99


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 549 QHGNVRVVSTNPDYVHNSKNNVDHNLHQTLLP 454
           +H  V VV+ +  + HN  +N DH+ +  + P
Sbjct: 401 KHIKVFVVNKDILHEHNVDDNEDHDENMIIPP 432


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 462 LLPILVARAIALKLSPCVLNMSQSVPVYLASI 367
           L+  L+   + L+LS CV+    +  VY+ S+
Sbjct: 138 LMLYLLFATLPLRLSFCVVLACSTATVYVMSV 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,768
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)