Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0551
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   5.2  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   6.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.9  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    25   9.1  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 179
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 39  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 191
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 15  FIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 161
           F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 238 FLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 265 HFSQATSFLNFPSLVISCDLISIHRAYFFNGSFSVL 158
           HFS+A     FP+L++ C    + R +  + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 286 QFVFSIRHFSQATSFLNF 233
           +++F ++ +SQAT F NF
Sbjct: 198 EYIFKLKDYSQATFFQNF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,312
Number of Sequences: 5004
Number of extensions: 49709
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)