Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0551
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   3.1  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    27   9.4  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    27   9.4  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 8   EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 115
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 KRTIEEVCSMYADQITADDQGREIQEGRRLAKVPNAEDKL 286
           K T+EE+ S+Y ++   DD+  E QE     +V     KL
Sbjct: 295 KETMEEIESLYDEESRLDDEIMEAQEKLNALRVDEDRRKL 334


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +2

Query: 128 IGEQTEDRRL*D*KRTIEEVCSMYADQITADDQGREIQEGRRLAKVPNAEDKL------- 286
           +GE  E+R++    R  E+   +  +++    +  E+QE     K    ++K+       
Sbjct: 236 VGEDPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQ 295

Query: 287 KVEKLIDACLANKGNSPHQTAWNYVKC 367
            + K+    L N  N+P+Q +   V+C
Sbjct: 296 SILKITSMKLGNLWNNPNQLSEEMVRC 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,254
Number of Sequences: 37544
Number of extensions: 293989
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)