Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0549
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   4.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.1  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 121 SPAKPPTRSPRP 156
           SP  PPT SP P
Sbjct: 94  SPTTPPTPSPPP 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 211 LKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVI 65
           L+  ++  L SS     S   +  L   +VIR TP+V + S+ +  +++
Sbjct: 353 LRFGKILLLVSSTFRTISGRTIEDLFFKKVIRDTPIVAIISNMYKNQIL 401


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 266 GAKVKSVCTFEGNTLKQV 319
           G      C FEGN +K +
Sbjct: 342 GRPATFTCNFEGNPIKTI 359


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 181 SSPSLRSSTVGVTALAALRVIRPTPMVFMNS 89
           +S S+  +T+G      +R    TPM  MNS
Sbjct: 70  TSSSMGYTTIGSPISNRIRHEMATPMATMNS 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,587
Number of Sequences: 336
Number of extensions: 1569
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)