Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0549
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   5.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.2  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   7.2  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.5  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 60  YKMTSSENFDEFMKTIGVGLITR 128
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2    NLSLKSIKLIYKNGIRRQEIQDDF 73
            NL L   +++++NGI     QDDF
Sbjct: 1815 NLQLGGTQVMHRNGISHLTSQDDF 1838


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 202 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 104
           +E T +YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 184 YSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 59
           +  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 240 HEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 138 NAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEETA 260
           N+  PTV+L  D       T S  +  +  F   +EF++TA
Sbjct: 70  NSNDPTVDLYADTYATQAATESDSELEDALFSQLDEFDDTA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,770
Number of Sequences: 5004
Number of extensions: 26584
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)