Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0549
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    28   3.1  
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445...    28   3.1  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    27   7.1  
07_03_1455 - 26659480-26659758,26659907-26660149                       27   9.3  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 30  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 209
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 210 KTTEMKFKPGEEFEE 254
           + TE   K  ++FEE
Sbjct: 496 EETEDLRKQRQKFEE 510


>01_05_0658 -
           24043655-24043945,24044003-24044257,24044359-24044530,
           24044617-24044844,24045688-24045821,24045908-24045991,
           24046202-24046492,24046571-24046903,24047002-24047246,
           24047476-24047742,24048305-24048465,24048556-24048872,
           24048966-24049247,24049325-24049626,24049699-24049789,
           24049881-24049934,24050028-24050104,24050192-24050367,
           24051331-24051540,24051626-24052029
          Length = 1457

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 26/98 (26%), Positives = 37/98 (37%)
 Frame = +3

Query: 78  ENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEET 257
           EN  EF + +G     RK        V  RKD  +Y       ++     + P +EF   
Sbjct: 413 ENVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYR-----YVPIKEFASA 467

Query: 258 ALTVLR*NPYAHSKATPXSKSXRPPTXLKSLTXGNSAL 371
             +       A+  ATP  KS   P  L +   G SA+
Sbjct: 468 FQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAM 505


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 95  HEDHRRGSDHPQSRQRGHPDR 157
           H  HRRG  H Q +   HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296


>07_03_1455 - 26659480-26659758,26659907-26660149
          Length = 173

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 254
           TV LR    E  L+TSS    TE   K GEEF++
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKK 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,639
Number of Sequences: 37544
Number of extensions: 198530
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)