Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0549
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          27   5.5  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      27   7.3  
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     27   9.6  
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   27   9.6  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         27   9.6  

>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 190 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 101
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +3

Query: 81  NFDEFMKTIGVGLITRK--AANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 254
           N + F +  G  ++  +  AA A+ P V + K  D  +  T   FK     +     F +
Sbjct: 134 NLELFRRCAGSAVMKTRLMAARAIVPLV-IVKAADRMSC-TGHYFKENPC-YLTRAVFLD 190

Query: 255 TALTVLR*NPYAHSKATPXSKSXRPPTXLKSLT 353
            A T++  NP+AH  ++P ++  R     K +T
Sbjct: 191 IAHTLINSNPWAHGDSSPVAEKTRISRMRKFIT 223


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 229 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 53
           NF+  V   E    +   P +  +  G T+  ++ R  +PTP+    +    E +  YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446

Query: 52  PTNSIFID 29
            + S+FI+
Sbjct: 447 FSGSVFIN 454


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 158 HGRGDRVGGFAGDQTHADG 102
           HG GD  GG  GD  H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408



 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 158 HGRGDRVGGFAGDQTHADGLHELIKVLGGSH 66
           HG GD  GG  GD  H  G H      GG H
Sbjct: 365 HGGGDHGGGDHGDGDHGGGDHGGGDHGGGDH 395


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 33  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTP 152
           ++M   GK       +  D+F  T+  G++  K ANA+ P
Sbjct: 70  VRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLANAIQP 109


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 RPSAWV*SPAKPPTRSPRPWSSVRM 174
           RPS+++  P  PP  S   W+++RM
Sbjct: 181 RPSSYLHDPLGPPPESEDVWTTLRM 205


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 121  SPAKPPTRSPRPWSSVR 171
            +P  PP  +PRPW  +R
Sbjct: 1388 TPTSPPPPNPRPWGGLR 1404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,247
Number of Sequences: 59808
Number of extensions: 213224
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)