Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0549
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 84 4e-17
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 82 2e-16
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 77 8e-15
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 75 2e-14
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 62 2e-10
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 62 2e-10
U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding p... 40 8e-04
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 33 0.097
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 33 0.097
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 33 0.097
U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding p... 32 0.17
U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding p... 32 0.17
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 30 0.91
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 29 1.6
U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding p... 29 2.1
U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding p... 29 2.1
AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical... 27 4.8
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 84.2 bits (199), Expect = 4e-17
Identities = 39/73 (53%), Positives = 54/73 (73%)
Frame = +3
Query: 42 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 221
+F+G+ +K+ +ENFDE+MK IGVGLITRKAA + P +E+R DG+ +N STFK T+
Sbjct: 6 DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64
Query: 222 MKFKPGEEFEETA 260
+ FK GEEF E +
Sbjct: 65 LSFKLGEEFVENS 77
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 82.2 bits (194), Expect = 2e-16
Identities = 39/75 (52%), Positives = 55/75 (73%)
Frame = +3
Query: 33 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 212
+ EFVG+ +K+ SENF+E+MK +GVGLITRKAA + PT+E++ +GD + STFK
Sbjct: 1 MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59
Query: 213 TTEMKFKPGEEFEET 257
T + FK G+EF+ET
Sbjct: 60 NTTLSFKLGQEFDET 74
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 76.6 bits (180), Expect = 8e-15
Identities = 35/73 (47%), Positives = 53/73 (72%)
Frame = +3
Query: 42 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 221
EF+G+ +K+ SENF+E++K IGVGL+ RKAA+ +PT+E++ DGD ++ STFK +
Sbjct: 6 EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64
Query: 222 MKFKPGEEFEETA 260
+ FK E+F E A
Sbjct: 65 LAFKIREKFVEIA 77
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 75.4 bits (177), Expect = 2e-14
Identities = 33/72 (45%), Positives = 55/72 (76%)
Frame = +3
Query: 42 EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 221
+FVG+ +K+ SENF++++K +GVGL+ RKAA A PT+E++ +G+++++ STFK T
Sbjct: 5 QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63
Query: 222 MKFKPGEEFEET 257
++F G EF+ET
Sbjct: 64 LEFTLGVEFDET 75
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +3
Query: 33 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 212
I+ + VGK + SSENFDE++K +GVG R A P +E +GDE+ + ++STFK
Sbjct: 3 IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61
Query: 213 TTEMKFKPGEEFEE 254
+K+K G +E
Sbjct: 62 NYTLKWKLGTASDE 75
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +3
Query: 33 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 212
I+ + VGK + SSENFDE++K +GVG R A P +E +GDE+ + ++STFK
Sbjct: 18 IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76
Query: 213 TTEMKFKPGEEFEE 254
+K+K G +E
Sbjct: 77 NYTLKWKLGTASDE 90
>U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding
protein protein 4 protein.
Length = 145
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +3
Query: 30 SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 203
S+ +F G+ Y++ SENFDEF+ + GV R+ +T + ++ +YN+ +
Sbjct: 2 SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60
Query: 204 TFKTTEMK-FKPGEEFEETAL 263
+ K T + ++ G++FE L
Sbjct: 61 SKKNTNYQAWELGKKFEAPGL 81
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 72 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 236
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 72 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 236
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 72 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 236
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding
protein protein 3,isoform b protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.17
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 33 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 206
I +F GK Y + SENFDEF+ GV R+ + L K+ +YN+ ++
Sbjct: 8 IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66
Query: 207 FKTTEMK-FKPGEEFEETAL 263
K T ++ G+ FE L
Sbjct: 67 KKNTLYHGWELGKTFEAEGL 86
>U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding
protein protein 3,isoform a protein.
Length = 165
Score = 32.3 bits (70), Expect = 0.17
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 33 IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 206
I +F GK Y + SENFDEF+ GV R+ + L K+ +YN+ ++
Sbjct: 23 IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81
Query: 207 FKTTEMK-FKPGEEFEETAL 263
K T ++ G+ FE L
Sbjct: 82 KKNTLYHGWELGKTFEAEGL 101
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 29.9 bits (64), Expect = 0.91
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = -2
Query: 238 PGLNFISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 86
PGL F S++ K VT S +L SST + +A+ I PT +F NSS
Sbjct: 842 PGL-FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 126 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 254
+ A + TP D+ + T++T TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338
>U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding
protein protein 2 protein.
Length = 161
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 60 YKMTSSENFDEFMKTIGVGLITRKAANAVT 149
+ + SENFDE++ G G TRK T
Sbjct: 30 FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 59
>U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding
protein protein 1 protein.
Length = 159
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 60 YKMTSSENFDEFMKTIGVGLITRKAANAVT 149
+ + SENFDE++ G G TRK T
Sbjct: 28 FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 57
>AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical
protein F16B4.11 protein.
Length = 440
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 105 IGVGLITRKAANAVTPTVELRKDGDEYNL 191
+ + L+ KA N + V +RKDGD NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 96 MKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEET 257
+K + G I +K + P + + +DG Y K ++FK E FE+T
Sbjct: 241 IKVLPAGKIEKKLIKELNPEMMVGRDGRRYRQKLREAEKQATVEFKL-ENFEQT 293
>Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical
protein K05D4.3 protein.
Length = 321
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 211 LKVEEVTKLYSSPSLRSSTVGVTALAALRV 122
LK V KL+ P +SS VGV A +R+
Sbjct: 286 LKSRNVFKLFCCPFSKSSQVGVVAQPVMRI 315
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 70 LPPRTLMSS*RPSAWV*SPAKPPTRSPR 153
LPP T +SS P+ +P PTRSP+
Sbjct: 299 LPPSTTLSSTPPTISPSAPTLLPTRSPK 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,541
Number of Sequences: 27780
Number of extensions: 155940
Number of successful extensions: 457
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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