Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0549
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    96   2e-22
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    45   3e-07
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    45   4e-07
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   6.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   6.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   6.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 95.9 bits (228), Expect = 2e-22
 Identities = 42/71 (59%), Positives = 57/71 (80%)
 Frame = +3

Query: 42  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 221
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 222 MKFKPGEEFEE 254
           +KFK GEEFEE
Sbjct: 63  IKFKLGEEFEE 73



 Score = 44.0 bits (99), Expect = 8e-07
 Identities = 23/42 (54%), Positives = 26/42 (61%)
 Frame = +2

Query: 266 GAKVKSVCTFEGNTLKQVXKAPXGLEVTYXREFGPEEMKAVM 391
           G KVKSVCT +GN L QV K     + T  REF   EMKA+M
Sbjct: 78  GRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIM 117


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 45.2 bits (102), Expect = 3e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +3

Query: 39  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 218
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 219 EMKFKPGEEFEET 257
              FK    FEET
Sbjct: 60  TKTFKMNVPFEET 72


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 44.8 bits (101), Expect = 4e-07
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +3

Query: 42  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 221
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 222 MKFKPGEEFEET 257
             FK    FEET
Sbjct: 59  KTFKMNVPFEET 70


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 226 FISVVLKVEEVTKLYSSPSLRSSTV 152
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 287 CTFEGNTLKQV 319
           CT EGN LK+V
Sbjct: 57  CTAEGNELKRV 67


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 287 CTFEGNTLKQV 319
           CT EGN LK+V
Sbjct: 57  CTAEGNELKRV 67


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 287 CTFEGNTLKQV 319
           CT EGN LK+V
Sbjct: 57  CTAEGNELKRV 67


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 96  MKTIGVGLITRKAANAVTPTVELRKDGDEYN 188
           MKTI  G    +    V    E  K G EY+
Sbjct: 513 MKTIKKGSFVTQYVGEVITNEEAEKRGKEYD 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,790
Number of Sequences: 438
Number of extensions: 1860
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)