Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0548
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1; ...    37   0.18 
UniRef50_Q74Z68 Cluster: AGR338Cp; n=1; Eremothecium gossypii|Re...    33   2.9  
UniRef50_UPI000065E699 Cluster: PHD finger protein 20 (Hepatocel...    32   3.8  

>UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 848

 Score = 36.7 bits (81), Expect = 0.18
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 223 PKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRP-GFPPPLPIKKYKTL 71
           P+ +  +   K    ++TS  TS  AV   HT+  RP GFPP L I K K L
Sbjct: 579 PRSKEQISDEKAGTRNSTSIPTSASAVPNTHTESSRPSGFPPKLNIPKRKNL 630


>UniRef50_Q74Z68 Cluster: AGR338Cp; n=1; Eremothecium gossypii|Rep:
           AGR338Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 825

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 115 PGFPPPLPIKKYKTL*KAVLYVIFYFTDISSKSNFSN 5
           PGF PP   ++  T+ K+ +Y+  Y  +I   SNFSN
Sbjct: 390 PGFIPPAVAQQIYTVGKSYIYLETYLKEIEWASNFSN 426


>UniRef50_UPI000065E699 Cluster: PHD finger protein 20
           (Hepatocellular carcinoma-associated antigen 58)
           (Glioma-expressed antigen 2) (Transcription factor TZP)
           (Novel zinc finger protein).; n=1; Takifugu
           rubripes|Rep: PHD finger protein 20 (Hepatocellular
           carcinoma-associated antigen 58) (Glioma-expressed
           antigen 2) (Transcription factor TZP) (Novel zinc finger
           protein). - Takifugu rubripes
          Length = 867

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 211 LVLHPTKVSISSNTSARTS---QKAVCVQHTQHPRPGFPPPLPIKKYKTL 71
           L +H  +VS+S  T+A +    QK      +  P    PPP P+K Y+ +
Sbjct: 284 LPMHKEQVSVSMTTTASSGEVEQKPNIQSESSRPAEDVPPPQPVKLYRVI 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,997,602
Number of Sequences: 1657284
Number of extensions: 6814227
Number of successful extensions: 16504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16491
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)