Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0548
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0958 + 22881718-22881999,22882114-22883880                       28   2.4  
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    28   3.2  
11_03_0015 + 8975199-8975277,8975574-8975607,8976744-8976957,897...    27   4.3  
11_06_0398 + 23122828-23123043,23124769-23125173                       27   5.6  
07_01_1058 - 9292890-9293655,9293831-9294600                           27   5.6  
01_01_0761 - 5874953-5876803                                           27   5.6  
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385...    27   7.5  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     27   7.5  
08_01_0265 + 2148255-2150219,2150735-2150812                           26   9.9  

>07_03_0958 + 22881718-22881999,22882114-22883880
          Length = 682

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 154 QKAVCVQHTQHPRPGFPPPLPIKKYKTL*KAVLYV-IFYFTDISSKSNFSNS 2
           ++A+     + P P  PP +P+  Y +L    LY      +  SS + FS+S
Sbjct: 595 KQALAALQFEAPLPALPPTMPVPTYSSLPSLALYCDAAAASSSSSSAGFSSS 646


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 175 NTSARTSQKAVCVQHTQHPRPGFPPPLPIKK 83
           N  ART+ +   V     P P F PP P++K
Sbjct: 312 NNLARTNSELFAVDPPPPPPPPFLPPFPVEK 342


>11_03_0015 +
           8975199-8975277,8975574-8975607,8976744-8976957,
           8977144-8977182,8977266-8977358,8977448-8977546,
           8978163-8978264,8978301-8978378,8978696-8978779,
           8979172-8979237,8979861-8979947
          Length = 324

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 128 ATSAARLPTSTTNKKI*NAMKGSFIC 51
           ATS+++ P+S TNK++ +  KG  +C
Sbjct: 210 ATSSSQKPSSETNKRVGSLEKGMELC 235


>11_06_0398 + 23122828-23123043,23124769-23125173
          Length = 206

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 208 VLHPTKVSISSNTSARTSQKAVCVQHTQH---PRPG 110
           +L  TK +I    S RTS  ++C+ ++Q+   PRPG
Sbjct: 147 LLENTKFAIWGAGSNRTSSASLCIANSQYPFNPRPG 182


>07_01_1058 - 9292890-9293655,9293831-9294600
          Length = 511

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +1

Query: 73  AFYIFLLVVEVGSRAADVACAGHKPLSVMFAH*CCYLSIPWSGATLIDL*DGIIRGSVSC 252
           AF IF+L V  G R    +  GH+ L V       ++   W   TLI+  D  + G+   
Sbjct: 377 AFGIFILEVICGQRPIKQSREGHQILLV------DWVIHHWKNGTLIETVDKRLEGNHDT 430

Query: 253 NEGIIIV 273
           +E I+++
Sbjct: 431 DEAILVL 437


>01_01_0761 - 5874953-5876803
          Length = 616

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 211 LVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPP 98
           LV+ P  +SI+S    R S   V       P P  PPP
Sbjct: 15  LVVTPLPISIASPLKLRLSASEVAALEAHAPPPPPPPP 52


>09_04_0573 +
           18636083-18636237,18637842-18638365,18638420-18638529,
           18638639-18638677,18638724-18638764,18638862-18638960,
           18639405-18639576
          Length = 379

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 253 YRRPTRVLYHPKGRLVLHPTKVSISS-NTSARTSQKAVC 140
           Y R   V YH K RLV  P K++I S  T   +S K +C
Sbjct: 100 YSRSQAVGYHVKIRLVGLPPKMNIKSLRTCFASSGKQLC 138


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 166 ARTSQKAVCVQHTQHPRPGFPPPLP 92
           A+ +Q+  CV+  Q P P  PPP P
Sbjct: 145 AQANQRRGCVELQQQPPPPPPPPPP 169


>08_01_0265 + 2148255-2150219,2150735-2150812
          Length = 680

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 238 RVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPP 98
           R+L+ P   L   P   S S++TS+ +S  A   +  + PRP  PPP
Sbjct: 12  RLLHSPHAFL---PKATSTSTSTSSSSSSAAAGGEALK-PRPRLPPP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,990,226
Number of Sequences: 37544
Number of extensions: 194214
Number of successful extensions: 533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)