Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0548
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                28   3.3  
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_36052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 253 YRRPTRVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHP 119
           Y + TR  YHP+    +H T  +I  ++  R  +  V    T HP
Sbjct: 261 YNKCTREDYHPENIQAMHGTTAAIFQHSRLRYLRNGVLPAFTGHP 305


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 220  KGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIKKYKTL*KAVLYVIFY 41
            K  L LH T   +       T+    C    + P P  PPP P+ ++ T  K  L+   +
Sbjct: 1891 KAHLPLHKTDEILPQPLDVNTNS---CPTPPREPTPPPPPPTPLPEFITQFKGSLWFEKF 1947

Query: 40   FTD 32
            + D
Sbjct: 1948 YPD 1950


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 87  KNIKRYERQFYMLYFIL---LISHPRATSR 7
           KNI+  ER  Y+LYFI       HPR  SR
Sbjct: 296 KNIQHLERTVYVLYFITPKKTTPHPRPHSR 325


>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 175 NTSARTSQKAVCVQHTQHPRPGFPPPLP 92
           N +A+T  +  C      P  GF PPLP
Sbjct: 35  NNAAKTEHQVACQVCKNKPVVGFSPPLP 62


>SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 178 SNTSARTSQKAVCVQHTQHPRPGFPPPLPIK 86
           +NT  R    A C  H +  R G P P+P +
Sbjct: 16  ANTCGRRCMDAYCKVHLKRLRKGIPLPVPCR 46


>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 130 TQHPRPGFPPPLPIKKYKT 74
           T  P+PG+P P P  +Y T
Sbjct: 83  TPSPKPGYPTPSPSPRYPT 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,234,914
Number of Sequences: 59808
Number of extensions: 222293
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)