Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0548
         (405 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2655|AAF48792.1| 4081|Drosophila melanogaster CG7092-PA...    28   4.1  
AE013599-1786|AAZ52807.1|  359|Drosophila melanogaster CG13344-P...    28   4.1  
AY069251-1|AAL39396.1|  359|Drosophila melanogaster GM02568p pro...    27   7.2  
AE013599-1785|AAF58321.2|  374|Drosophila melanogaster CG13344-P...    27   7.2  

>AE014298-2655|AAF48792.1| 4081|Drosophila melanogaster CG7092-PA
            protein.
          Length = 4081

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -3

Query: 259  LHYRRPTRVL---YHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHP 119
            LHY +  ++L   YH   R V H   ++I      +   K VC+ H   P
Sbjct: 2249 LHYNQENQILRLFYHETTR-VFHDRLINIEDKNIFKALMKEVCMDHFNRP 2297


>AE013599-1786|AAZ52807.1|  359|Drosophila melanogaster CG13344-PB,
           isoform B protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 226 HPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIKK 83
           HP     +   + ++   T     Q+ VCV    HP PG+P   P  K
Sbjct: 7   HPGKSGEVEQIETTVLPLTGEEEEQQYVCVTLQVHPTPGYPEESPTFK 54


>AY069251-1|AAL39396.1|  359|Drosophila melanogaster GM02568p
           protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 172 TSARTSQKAVCVQHTQHPRPGFPPPLPIKK 83
           T     Q+ VCV    HP PG+P   P  K
Sbjct: 25  TGEEEEQQYVCVTLQVHPTPGYPEESPTFK 54


>AE013599-1785|AAF58321.2|  374|Drosophila melanogaster CG13344-PA,
           isoform A protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 172 TSARTSQKAVCVQHTQHPRPGFPPPLPIKK 83
           T     Q+ VCV    HP PG+P   P  K
Sbjct: 40  TGEEEEQQYVCVTLQVHPTPGYPEESPTFK 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,938
Number of Sequences: 53049
Number of extensions: 324023
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)