Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0548
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48380.1 68416.m05280 expressed protein                             29   1.2  
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr...    27   4.8  
At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family pr...    27   4.8  
At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family pr...    27   4.8  
At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family pr...    27   4.8  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    27   6.3  
At3g29150.1 68416.m03649 expressed protein                             27   6.3  
At2g22600.1 68415.m02679 KH domain-containing protein                  27   6.3  
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain...    27   6.3  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    26   8.3  
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    26   8.3  

>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = -3

Query: 280 KNILL*YLHYRRPTRVLYHPKGRLVLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPP 101
           K I+L +L    P   +YH     VLHP   S+       T  K V V+   H R G P 
Sbjct: 342 KKIILPHLLVEHPQLRIYHFNPPGVLHPI-TSMYELNYGETEMKQVDVRKLLHLRLGLPL 400

Query: 100 PLPI 89
             P+
Sbjct: 401 DRPL 404


>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 406

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 276 IYYYNTFITGDRPAYYTILKVD*CCTRP 193
           +YY+   I  ++P++  +L  D CC+ P
Sbjct: 98  LYYFRDRIMEEKPSHVFLLNCDVCCSFP 125


>At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 387

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 276 IYYYNTFITGDRPAYYTILKVD*CCTRP 193
           +Y++   I  D P++  +L  D CC+ P
Sbjct: 101 LYHFRNLIMEDSPSHIFLLNCDVCCSFP 128


>At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 415

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 276 IYYYNTFITGDRPAYYTILKVD*CCTRP 193
           +Y++   I  D P++  +L  D CC+ P
Sbjct: 101 LYHFRNLIMEDSPSHIFLLNCDVCCSFP 128


>At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 415

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 276 IYYYNTFITGDRPAYYTILKVD*CCTRP 193
           +Y++   I  D P++  +L  D CC+ P
Sbjct: 101 LYHFRNLIMEDSPSHIFLLNCDVCCSFP 128


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 199 PTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLP 92
           P K  I   +SA  +Q      HT    PG PP  P
Sbjct: 431 PNKSYIPRCSSAPVTQSTTTTAHTYPSSPGVPPSQP 466


>At3g29150.1 68416.m03649 expressed protein
          Length = 417

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 238 GSVSCNEGIIIVYFWH*FSGGQY 306
           G V+CN   +IV +WH ++ G+Y
Sbjct: 7   GDVTCNPMDVIVPYWH-YTAGRY 28


>At2g22600.1 68415.m02679 KH domain-containing protein 
          Length = 632

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 121 PRPGFPPPLPIKKYKTL 71
           P  G+PPPL IK Y++L
Sbjct: 214 PLNGYPPPLSIKGYESL 230


>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1159

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 262  YLHYRRPTR---VLYHPKGRLVLHPTKVSISSNTSART 158
            Y +YR+P R   ++YH   R +LH   +     +SA+T
Sbjct: 977  YENYRKPGRFFDIVYHENARALLHDQNIYRIEYSSAQT 1014


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 187  SISSNTSARTSQKA--VCVQHTQHPRPGFPPPLPIKKYKTL*KAVLYVIFYFTD 32
            S+ SN     S +   VC Q+ +HP     P + I  YK L K  ++ +    D
Sbjct: 2065 SVKSNAVLAVSLRGDGVCAQNLRHPTGSSSPMVGITAYKPLSKDNVHCLVLHDD 2118


>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -1

Query: 327 HIYMXDFILAAAKSMPKIYYYNTFITGDRPAYYTILKVD*CCTRPR 190
           H    D+ LA A      Y    +  GD P YY +   D    +PR
Sbjct: 357 HYKAKDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPR 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,691,849
Number of Sequences: 28952
Number of extensions: 146346
Number of successful extensions: 382
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)