Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0547
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   118   6e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   118   6e-28
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.27 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.36 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.47 
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   2.5  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   2.5  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   5.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   5.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  118 bits (283), Expect = 6e-28
 Identities = 51/75 (68%), Positives = 66/75 (88%)
 Frame = +3

Query: 27  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 207 ARVRKNTEARRKGRH 251
            R+RK   A+R GRH
Sbjct: 61  FRIRKTHAAKRLGRH 75



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +2

Query: 257 FGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFXNXXV 436
           +GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN F +   
Sbjct: 78  YGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRA 137

Query: 437 LMEYIHR 457
           L+E+I R
Sbjct: 138 LIEHIQR 144


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  118 bits (283), Expect = 6e-28
 Identities = 51/75 (68%), Positives = 66/75 (88%)
 Frame = +3

Query: 27  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 207 ARVRKNTEARRKGRH 251
            R+RK   A+R GRH
Sbjct: 61  FRIRKTHAAKRLGRH 75



 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +2

Query: 257 FGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFXNXXV 436
           +GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN F +   
Sbjct: 78  YGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRA 137

Query: 437 LMEYIHR 457
           L+E+I R
Sbjct: 138 LIEHIQR 144


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 229 SVFLRTRAREWTATGFLMTRPSLIILRMFC 140
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 170 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 81
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 149 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 54
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 300 FCGIRALAVPLLLPKHSDDPFYVPLCF 220
           +  I  L   + L KH DD  YVPL F
Sbjct: 336 YFSIENLCKDMFLRKHMDDEGYVPLAF 362


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 281 WQYLFSYQSTVTTLSTCLCVFADTGAGVDCYRFLDDE 171
           WQYLF  +  VT L   + +F      V+   FL DE
Sbjct: 219 WQYLFLIEGGVTFL-CAIVIFLVLPVSVETANFLTDE 254


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 305 VPSVAYAHWQYLFSYQS 255
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 87  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 233
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 234 RRKGR 248
           R+  R
Sbjct: 349 RKSLR 353


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 30  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 155
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,423
Number of Sequences: 5004
Number of extensions: 42172
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)