Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0547
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 121 3e-28
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 120 8e-28
04_04_1687 - 35365766-35366356,35367137-35368135 29 2.5
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 28 3.3
04_03_0266 + 13648287-13649099,13649186-13649524 28 3.3
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 28 3.3
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 28 3.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 4.4
07_03_1377 + 26155030-26155671 28 4.4
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 4.4
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 5.8
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 5.8
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 121 bits (291), Expect = 3e-28
Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 207 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 302
+R R+ EA++KGRH RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/80 (46%), Positives = 45/80 (56%)
Frame = +2
Query: 224 HRGT*KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 403
H KG +GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 404 AKGNVFXNXXVLMEYIHRKE 463
KGN+F N VLME IH+ +
Sbjct: 127 VKGNMFKNKRVLMESIHKSK 146
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 120 bits (288), Expect = 8e-28
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 207 ARVRKNTEARRKGRHCAL-----VREEVLPMRVCHRR 302
+R R+ EA++KGRH RE LP ++ R
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/80 (46%), Positives = 45/80 (56%)
Frame = +2
Query: 224 HRGT*KGSSLCFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 403
H KG +GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 404 AKGNVFXNXXVLMEYIHRKE 463
KGN+F N VLME IH+ +
Sbjct: 127 VKGNMFKNKRVLMESIHKSK 146
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 176 HQETCSSPLPRPCPQKHR 229
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 212
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 213 VRKNTEARRKGR 248
+ T RKGR
Sbjct: 806 DEETTSISRKGR 817
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 81 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 227
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 212
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 213 VRKNTEARRKGR 248
+ T RKGR
Sbjct: 757 DEETTSISRKGR 768
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 12 RHEVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 185
RH+ +++S+K A S + G+ K+ ++IN +A +Q +++ + D V +K
Sbjct: 850 RHQTKVASIKQDYDQAESELNIGRSKLKECDSQINSMA--KEQQKLQQQLSDSNVERK 905
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 96 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 200
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>07_03_1377 + 26155030-26155671
Length = 213
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 335 FLEPFVFVP-IVPSVAYAHWQYLFSYQSTVTTLSTCLCVFADTGAGVDC 192
F EP + +P IV +A A + +SY S + + + L A GA V C
Sbjct: 20 FREPLLLIPYIVGFLAAASSGFFYSYSSFLHSFARSLVPAAAAGAVVKC 68
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 207 ARVRKNTEARRK 242
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 51 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 176
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 242
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,252
Number of Sequences: 37544
Number of extensions: 310291
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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